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53-3159-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24204026 [Map]; Strand: w
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 1089; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -3663; Region: intergenic
    Flanking Genome Sequence: 53-3159-1 - 5-prime edge 
    TATGGTCATT GCATTGAGCT CTCGTTTTAG AAGTATGTAG TAACTTCTGT 
    ATGCGGAGGA GTCAACGGTA GTGGTTGTTG TGGAGCTTTT GGAGTGCGAC 
    GGAGATAGGT TGATGAGGCT GGCAAAGATT GAGTTTGGGA ATATCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203902 [Map]; Strand: w
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 965; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -3787; Region: intergenic
    Flanking Genome Sequence: 53-3159-1 - 3-prime edge 
    AAGATTAACT GCGATGATCC CTAGATAAAA TGGATTTGAT CTTGTCACTT 
    GCTAATGAGA GCATTAATGT CAAATTATAA AGATTTTAAC TAATGCGAGT 
    TTTAATTTTT TTTACATTAA TTGACCTTGT ATTCATAGAA CATTTGTAGC 
    AAAAACTTGG AAAACAGAGG TTTCTCTCTA TTGTTATACT TGTAGGGCTG 
    CAAATTGGAA AAAGAAAAAA CACTGCTAAA ACGCCGTCGT TTTCGAAAAT 
    TAGTCATTAG AGGCCCACGG GAACACGATA TATGGGCCTA AGTTTCGGTC 
    AATTCTATAT AAGAAAATGA CAATACTGTC CTAAATAATA GAGGCACAGA 
    GACAGAGAAA AGCTTTTAAC TTACTGGTTT TACAACTGTG AGCTGATTTC 
    TGATGTGCCA CTCTATTAAA AGCTTTTAAC TTATTGAATT CA

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60120.2

Model type
Protein coding
Short Description
target of early activation tagged (EAT) 2
Computational Description
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.2).
Link
InterPro Scan - TAIR