Home
Mutant Lines
53-3161-1

53-3161-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 24182724 [Map]; Strand: c
- AT5G60040.2 - [+] show detail - nuclear RNA polymerase C1
  Distance: 0; Region: intron27 (CDS)
- AT5G60040.1 - [+] show detail - nuclear RNA polymerase C1
  Distance: 0; Region: intron26 (CDS)

CCGAGAACCT CCCCCTGATC AAGAAATTGA AGTAACATTT AATCATTAAC 
ATGACTGTAT TGCAATAAAG TTATTAGTAG CGATAATAAT AACAGATTCA 
AGAGTCCTTA GAAGTTAGAA CTTGACCCTG TAAGTCATGA CATCAGCCAA 
AAGCATCATG TGACGGATGT CTATACTCAT ACCATGGTTT CCCATAACTG 
TCCCTATTTC ATCAATAATC GTTGTCCTTG CAGCCTCGAT TCCAAGTGTT 
TTGCTTACTT CGACAACATT GTTACTTGTA GTAGTTCTCC CATTGATTCC 
CGGTGTCCCC ATAACTGCCA GGAGGTTTGT GCTGAAACAT ATATCAAGCT 
AAATATTCAT AATCTAAAAT AAGAATTTCA AACCGGACAT GTATATGTTT 
CTAGAAAGCG TTTTGTTTTG TTTAAAAGTT TGGTTTAAGC ACGTGAAATA 
CTGAATTCAT CT

3 prime edge [+] show sequence

Chromosome: 5; Position: 24182840 [Map]; Strand: c
- AT5G60040.2 - [+] show detail - nuclear RNA polymerase C1
  Distance: 0; Region: exon28 (CDS)
- AT5G60040.1 - [+] show detail - nuclear RNA polymerase C1
  Distance: 0; Region: exon27 (CDS)

GTTCTCGGAA TACAAAGAAC CGGGATTCAG AAGATGGATA AAAGTGTTCT 
GATGCAGGCA TCTTTTGAGA GGACTGGAGA TCATTTATTT AGTGCAGCAG 
CTAGCGGAAA AGTTGATAAC ATAGAGGGAG TTACAGAATG TGTGATTATG 
GGCATACCAA TGAAGCTCGG AACCGGGATA CTCAAAGTCC TTCAAAGGTC 
AGATTTCATT CCTCTCTGTT TTTTGGGGTT GAGGTTGTGA CTTTTGCTTA 
TGACATTACT CGAGTTGTCT GATAGACATG CGAGATCTCA TCTTGTTCAA 
TGAGCCTTTT TTATATAGAA AAAAATGTAA ACGTTAAACA TATGCTTAAG 
ATACCAACTA CCAATAGCAA GTCCTCTCTG TTCCATTAAT CTCGTCTGTA 
AACTAACTCT GTGGTTAATC TTGATCTACA GGACCGATGA

AT5G60040.1

Model type: Protein coding
Short Description: nuclear RNA polymerase C1
Curator Summary: Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
Computational Description: nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1); Has 28475 Blast hits to 24538 proteins in 8142 species: Archae - 517; Bacteria - 7526; Metazoa - 2258; Fungi - 3135; Plants - 6544; Viruses - 257; Other Eukaryotes - 8238 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60040.2

Model type: Protein coding
Short Description: nuclear RNA polymerase C1
Curator Summary: Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
Computational Description: nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1).
Link: InterPro Scan - TAIR