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53-3168-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12174372 [Map]; Strand: w
      • AT4G23271.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -327; Region: promoter
      • AT4G23280.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 20
        Distance: -368; Region: promoter
    Flanking Genome Sequence: 53-3168-1 - 5-prime edge 
    CTCCTCACGC TGATTTTTCA TGCTCTCATA AATGATAAAT ATGACAACTC 
    CACGAAAAAA ATATGTATAT AGGATTAGCA AATTTAGAGA AAAAAAGAGA 
    GAAAATTAAA CTTGGAAATG TGTAAATCAA TGAGTTTTGA CGAGGAATTA 
    AAGTTTTTTT AAAAAGAGCA AATTACTGAC AAATAATTTA TCGTTACACA 
    GAAATCGTTA ACTCTTTTCT TTTTTTGGTA AGGCTATAAA TAGTAACTTA 
    AACTTCTCTC TTTGTTTGAA AGAACTAGCT ATTGTTTTGA CATTACAAAC 
    TAAAATTAAA TAAAACCGGC GTTTACCATG ACTTTCTTTG ATTGACTTAT 
    AGCCGTCAGA AGAGTATGAA CCATCCTCAA TTTCGCGTTA ATATACATAC 
    AGAGATTCAT GATCTAAAAC TCCAAATCAA GGAAAAGGAA GCATGTCTTC 
    TCTGATCTGT TTCATTTTCC TTTTCCTTTT CTCATTCATC ACTAGCTTCA 
    CAGCTTCTGC TCAAAATCCT TTTTACCTAT ATCATAATTC TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12174256 [Map]; Strand: w
      • AT4G23271.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -211; Region: promoter
      • AT4G23280.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 20
        Distance: -484; Region: promoter
    Flanking Genome Sequence: 53-3168-1 - 3-prime edge 
    GTGAGGAGAG TACTTCAAAG TTCAAACATA GTCTTGTCTT TACGTTATAA 
    TTGAAGCTTC TCCCAAAGAA ATTCTTACAG AACTGAAAAA TAGCATTTTA 
    AGTTTACAAC ATAAAATTTA ACTCAATGTG CTTCTTATTT GTGGAGAAAA 
    ATCAAATCTA GCTTGATCAT TATTGATGTA CGAAATCAAA CAAGTAACAA 
    ACGAGATCTC AAGGGAAGTT TAAAGAATCA CTATTTTATA GATGGGTGTA 
    GATCGCTTCT TGGATGAGTA GTTTGAGGAC GACCGTCAAG ATTCTTAATC 
    G

AT4G23271.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G23280.1

Model type
Protein coding
Short Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 20
Curator Summary
Encodes a cysteine-rich receptor-like protein kinase.
Computational Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (CRK20); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to bacterium, defense response, programmed cell death, response to salicylic acid stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (TAIR:AT4G23270.1); Has 119459 Blast hits to 118018 proteins in 4463 species: Archae - 96; Bacteria - 13614; Metazoa - 44023; Fungi - 10123; Plants - 33901; Viruses - 397; Other Eukaryotes - 17305 (source: NCBI BLink).
Link
InterPro Scan - TAIR