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Mutant Lines
53-3187-1

53-3187-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 20770481 [Map]; Strand: c
- AT3G55970.1 - [+] show detail - jasmonate-regulated gene 21
  Distance: -1157; Region: intergenic
- AT3G55980.1 - [+] show detail - salt-inducible zinc finger 1
  Distance: -5814; Region: intergenic

CGTTTTATAT GCTTCAACGT CGTCGTTTTA GTCAGAAAGT AGACTCACTA 
AAGACTTGAC CATCTAATTA ACACACTAAT TTTGAAAAAT CTATATATAC 
ATTTTTGCAG CCATTTTAAC AAATAAATCG TAGAGNTGGA CTTATTTACA 
ACCCAATGCC ATTAGCATTA ATNGNTTTNC AAAATAATTA ATTTTACTTT 
AANTACTGAA TTTAAANTGC GAANCNAATT ATCGNTNNAC GATCTTNAGA 
TCACCNGCCC GGGNAGGAGN ACCCGCGGNG CTNTGAGNAA GGGNACNAGN 
ANNAGNTGNN GCCTGNNNNN NNNCANAANC ANNGGNGCNG ANNANNGNGN 
ANGNNNNGAA ANG

3 prime edge [+] show sequence

Chromosome: 5; Position: 25370927 [Map]; Strand: w
- AT5G63290.1 - [+] show detail - Radical SAM superfamily protein
  Distance: -6; Region: promoter
- AT5G63300.1 - [+] show detail - Ribosomal protein S21 family protein
  Distance: -181; Region: promoter
- AT5G63300.2 - [+] show detail - Ribosomal protein S21 family protein
  Distance: -195; Region: promoter

GAGACCAGTG AACTTTGATC TTTGAAAGCT TTCTCTCTTC GTCTCTCTGG 
CTCTCTTTCT TTTTCTCTCG TTTTATTTGG TAATTATGCT GAAAACAACG 
ATTTCTCCAA TTTTCTCATC GTTTACAGGT AAACCCAAGT GCTCATCGAA 
GTTGTTTTTT CGAGCTTTTA GTAAGGTTGT TCTACAAGAT ACTCCACCAA 
GTGCTCGACG AAATGCGTNA ACCAATCTTA CTACGTNACA CAAAGGNNCA 
CCAANCTCAG CCTACGTTCA TCTTCCGNNT NGANANAAAC GCNGCCAAAA 
AAGNGACTCT CCTATCTNNG GTGTAGGCAT GACTTANGCT TCNGNCAGAN 
CGNCNNAATG TGGACNANGC CCCGANAAGN NGNGGNNCTG NGAATGNAAA 
ACNNNGGGGN AGGGAGNTTG TTNNAGGGCA NGGANGGGNN CTNGGGGCGG 
ATNNGGNGGA GAAAAACAAA CNCCCCANAN GGCGGAAACA GNNAGAGANC 
NCACCCTCAA AAAANANAAG CACNCCCCNN CCNNGGGCNT GTTTTTTTAA 
AACAANNNCN AAAAAAAANA NGGGGGGGNT TAAGGGGGGG GGGGCNCNAA 
AAANGGAANN GGGNCNCCNC NAANANAANA ATNATTTTTG NNNNGANNAA 
AAANTGGGNG CGGAAAAAAA NNNNNGGNCG NNTNNNAANG ANCNNTTTTN 
TANTNNTNTT TNNNNNNCNA NAGNNNNNNN CTNNNNCTTT TNTGGGGGGG 
AGNGNNANAN NGNNNNTANC GNNNANAANN CCNG

AT3G55970.1

Model type: Protein coding
Short Description: jasmonate-regulated gene 21
Computational Description: jasmonate-regulated gene 21 (JRG21); FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8809 Blast hits to 8750 proteins in 1005 species: Archae - 0; Bacteria - 1115; Metazoa - 109; Fungi - 1073; Plants - 4993; Viruses - 0; Other Eukaryotes - 1519 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G55980.1

Model type: Protein coding
Short Description: salt-inducible zinc finger 1
Computational Description: salt-inducible zinc finger 1 (SZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G40140.2); Has 1623 Blast hits to 1414 proteins in 181 species: Archae - 2; Bacteria - 49; Metazoa - 777; Fungi - 32; Plants - 465; Viruses - 2; Other Eukaryotes - 296 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G63290.1

Model type: Protein coding
Short Description: Radical SAM superfamily protein
Computational Description: Radical SAM superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron-sulfur cluster binding, coproporphyrinogen oxidase activity, catalytic activity; INVOLVED IN: oxidation reduction, porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Putative oxygen-independent coproporphyrinogen III oxidase (InterPro:IPR004559), HemN, C-terminal (InterPro:IPR010723), Radical SAM (InterPro:IPR007197); Has 10146 Blast hits to 10146 proteins in 2456 species: Archae - 113; Bacteria - 8401; Metazoa - 78; Fungi - 4; Plants - 37; Viruses - 0; Other Eukaryotes - 1513 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G63300.1

Model type: Protein coding
Short Description: Ribosomal protein S21 family protein
Computational Description: Ribosomal protein S21 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21 family protein (TAIR:AT3G27160.1); Has 1443 Blast hits to 1443 proteins in 604 species: Archae - 0; Bacteria - 1229; Metazoa - 17; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G63300.2

Model type: Protein coding
Short Description: Ribosomal protein S21 family protein
Computational Description: Ribosomal protein S21 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21 family protein (TAIR:AT3G27160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR