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53-3194-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14627714 [Map]; Strand: w
      • AT4G29905.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -83; Region: promoter
    Flanking Genome Sequence: 53-3194-1 - 5-prime edge 
    TTCTACAACG ACCATGTACT TATAGAAGAT GGAAGGTGGA TGACGTGGCA 
    AACTCTCCAA CGATACAATA TTTTAGGTTT TATTTTAAAA ACTCAAGTCC 
    TTGAAACCAA GTTTATAAGG TGTAGAAACT ATCTGTTAAT GATATATGCG 
    TAAGTGACAG GTTTCACGAA ACATAAATCA TATATTGCCA AACAAAAACT 
    TAAGTCGACA AGAAGATGGG AACAAAAACC TCACTCGTTT TGAGAGTTTC 
    ATTTGCTTAA CAGACACGTT TAATCTTATT CTTAGGTTTC AAAAGAAATG 
    AAACAACCTA ACTAAGATAG ATTCCGAAAT CAATTGCCAT AGAAACTCTA 
    GTAAAAATGT TTTAAACAAA TTTTTACAGA CCACATAGTT AAGTGGGAAA 
    TTGCTTCAAA TACTATGAAG TTTCCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14624446 [Map]; Strand: w
      • AT4G29900.1 - [+] show detail - autoinhibited Ca(2+)-ATPase 10
        Distance: -4873; Region: intergenic
      • AT4G29905.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 2475; Region: intergenic
    Flanking Genome Sequence: 53-3194-1 - 3-prime edge 
    GTAGATACAC ATCATCAACG ATTCTTCTTC TACTNGAACA AATCACGAAT 
    CTTCTTCTAC TNNAAAAAAA CTTATAACAC TTCTTTGGNT AAAAATGAAG 
    ATTTTTTGGT GACTTTATTT CACATATGNT TAAATAGNTA ATCTTCTTCC 
    GGGTCACCGA ATCTTC

AT4G29900.1

Model type
Protein coding
Short Description
autoinhibited Ca(2+)-ATPase 10
Curator Summary
one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.
Computational Description
autoinhibited Ca(2+)-ATPase 10 (ACA10); FUNCTIONS IN: calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: shoot development, inflorescence morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type cation exchange, alpha subunit (InterPro:IPR006069), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: autoinhibited Ca2+ -ATPase, isoform 8 (TAIR:AT5G57110.2); Has 46568 Blast hits to 34154 proteins in 3167 species: Archae - 903; Bacteria - 32081; Metazoa - 4140; Fungi - 2685; Plants - 2119; Viruses - 3; Other Eukaryotes - 4637 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G29905.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR