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53-3217-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23443511 [Map]; Strand: c
      • AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: -692; Region: promoter
      • AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: -692; Region: promoter
    Flanking Genome Sequence: 53-3217-1 - 5-prime edge 
    CNNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCNA TGCNGATGAT TTAAAAGNTG CCAGAACNNG 
    GANGCCGNGC ACGGCGAGCA CNAGACGCCC TATAACCGAT GANNATGATG 
    TGNACANATG TAATCAACAT TTTTGGTTTT GGTTTCCTCC TACCTTTGTC 
    TTTTGCATCT TTTACCTTTG TACTACTACT ACTACTTTCA GACGCTGTAA 
    ATGGTATAAA CGGAACAATC ATCACTTATG GACAGGTTTG TTCTTCTCCT 
    GATCTCTTTT ATCTGGAAAT GCTTTTAATG TCTTTTTCTT AATTTGGCAG 
    ATTTTGATCT CAATTTGATC GTTTCATGTT ATACTATGCA GACAGGGGCT 
    GGGAAGACTT ATTCCATGGA GGTCACCTAA CTCAACTTGA TACCTCTTCC 
    TGTAGCACAA GGACCATTCC TTCTTCTGGC TCATTTTGGT TTTCTTNGAT 
    TGATTCAGGG ACCAGGCATN CAGGACTGTG ATGAGCACAA TAAAGGACTT 
    NTTNCAAGAG TGGTCCATGG GATGTNNGAG CAAATNAGCT CTTNCAATGA 
    TATTGCAAGA TACACTGNNA AATTGTCTAT GGNACTGACT TAAATGCACT 
    TGCTATAAGT NTNCTTTNAA GCTCTNCTGT ATAGACATNT TACGNGNNTT 
    TNGNCTNCTN TAGGNTGAGA TCTACATGGA GAAAGTNAGG TATTGGGNAT 
    GNAATTNCNT NTGANTANTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 154784 [Map]; Strand: w
      • AT4G00355.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00355.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00355.4 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00355.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -104; Region: promoter
    Flanking Genome Sequence: 53-3217-1 - 3-prime edge 
    GTTCAGAAGA CAAAGTATGT GCCGACGAAG AAGAAGACGA AGACGATGAT 
    GATGTGATTG TGATGAGACG ATTGCAACCA AAAACCGCCT CGATTGCGCT 
    GCAAATGTGA AAATATACTC TACAAAAGAA TTATTCTCTG GGAAGCAAAG 
    ACCAAACCGG GTAATGGGTA GACCGGTTTC ATTTACTGGA CATTCGGGTA 
    AGCGAGTCGG ATTCGGATAA AATCCAATCG GATACAGATT TTTCGGGTTA 
    AAAGTTTAGG ATCCAATAGG GTAAATCTAA AATGTCGGTT TGATTTCGGT 
    TCGGATCCAA TCGAGTTTGG ATATAGATTT TTAGACCCTT TTTTAGAATC 
    GATATCCGAA TTTTTGGGTA AATATCCAG

AT3G63480.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63480.2

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 10148 Blast hits to 9733 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 4474; Fungi - 1347; Plants - 1834; Viruses - 0; Other Eukaryotes - 2493 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.1

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.2

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: chloroplast thylakoid membrane, ribosome, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 3-layer alpha/beta-sandwich (InterPro:IPR016095), Ribosomal protein L1, bacterial-type (InterPro:IPR005878); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.3

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.4

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR