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53-3236-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 380988 [Map]; Strand: w
      • AT4G00893.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein m...
        Distance: 0; Region: exon2 (CDS)
      • AT4G00895.1 - [+] show detail - ATPase, F1 complex, OSCP/delta subunit protein
        Distance: -800; Region: promoter
    Flanking Genome Sequence: 53-3236-1 - 5-prime edge 
    GACTTACAAG CTGCTGATGC TCGTATGTTA TCTTTTAAGA CAAGAAGTAA 
    CATTATCTCC TCTATGAGGC TTGATGGTAG GTCAGCGAAA CTCGGGTTCA 
    TGATCTTTTT ACTGGAATCT TGAAATCTGC AAAACAATCA ACTTTAAATT 
    CTTCTCAAAG TGAAAGTTCT AATATTTCAA CAACTGATCC AACCAAAAAA 
    AAAAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 380861 [Map]; Strand: w
      • AT4G00893.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein m...
        Distance: 0; Region: exon2 (CDS)
      • AT4G00895.1 - [+] show detail - ATPase, F1 complex, OSCP/delta subunit protein
        Distance: -927; Region: promoter
    Flanking Genome Sequence: 53-3236-1 - 3-prime edge 
    GTATGAAGCT GGTGTCTCTG TTCGTGTAGT CGATAAGCAT CCTTGGCTTA 
    TGTGTTTTCC TAAACGTGGC AACTTGTTCG AGTTCCGCGA CCCTTTACAC 
    TGGAAGTTAC ACACAGTTGG ATCTCCCAGA GTTAGCCTGA ATCAACCTGT 
    TTGTTACTCA AGATTCGGTT GGTTACTTAT GCGTAAAGCT TCATCAAACG 
    ACGTGTTCAT CTCACC

AT4G00893.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12370.1); Has 220 Blast hits to 215 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00895.1

Model type
Protein coding
Short Description
ATPase, F1 complex, OSCP/delta subunit protein
Computational Description
ATPase, F1 complex, OSCP/delta subunit protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: proton-transporting ATP synthase complex, catalytic core F(1), plasma membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 48 Blast hits to 48 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR