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53-3238-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19514463 [Map]; Strand: w
      • AT2G47560.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1735; Region: intergenic
      • AT2G47570.1 - [+] show detail - Ribosomal protein L18e/L15 superfamily protein
        Distance: 1435; Region: intergenic
    Flanking Genome Sequence: 53-3238-1 - 5-prime edge 
    GGCCGCAGAA ATAGCGAATC TATGGGTATT CACTTAAGTT GCCATGTTGG 
    GTAATTTATT TGATTATTGT TGAACCAACA GCAATAAGAG AGAGAAAAGA 
    TTGTATTATG ATTTGATGAA CAAGATAAGG TTGTCCATTG GTCAAAACAT 
    NCCCCANGTT GGGATATATT TCTATTTTCA TNNTNCTTCC ATGTGATGTG 
    CCGTGCGGCN AANCTANAAT CCTGTGCTNT CAAAGTTGNC TAAAGGTCTA 
    TCAGTGGTGG CACATACCAA AAAANCAAAA ANACTTTCCA GAAANATNNG 
    TAACNATCCC TGTGNNATCG GTTTCCTTTC CTATGGAATN AANTGACGAC 
    GCGCCACCCT GNNTTGCANT NNAANACNAN GCCGNCNTTN NTTNAATAAN 
    ATTCAGTGAA ANAAATGNNG GTTCNGGAAA AAAACNTNCC NANNNGGGGG 
    AATTTTTTTA TGAAAAAAAA AAAACCNGNG NCGNNCANCC CTNNTTAANN 
    NAGGGGGTNG CCCTCCCTTT GGCGGGAAAA ANAAATTTTN TTTTTTTANA 
    AAANGGNCCN CNANTACANN NCCNNCCCTN TTGNGAAAGG GNTTTTTCTN 
    CNTGGCGGTG GNNNGGNCCC CCCCTNCCCC NNTNNAAAAA AGGTTAANAA 
    AGAGNNGGGG GGGNNNNNAA ACNCCCCAGG GAAGNGGGNG NGAGAAACCN 
    GGGTTTNNNC NCCANNATTT TNNNNNNCGA AAANGGGGGC CC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19514347 [Map]; Strand: w
      • AT2G47560.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1619; Region: intergenic
      • AT2G47570.1 - [+] show detail - Ribosomal protein L18e/L15 superfamily protein
        Distance: 1551; Region: intergenic
    Flanking Genome Sequence: 53-3238-1 - 3-prime edge 
    CTGCGGCCGA CGTATGAGCA AACCCGTGAA TTAAAAAACC AACTTGTACA 
    TCGAAATACT ATTTTAAACA ACATTTCACT AACCTTGGCC AATATATTAA 
    AACTACGTTA ACTTTTTGTA TATTTATAAT AATTGTAATG TTGTTGAACA 
    TTGAGAAGCA AGAAAAGTAG AAAACTGCGA AATTGAGTGA GAAATGAAAA 
    GAATAATAAT AATGGTGATG GTAACTAATT ATAGAAGAGC ATATAATTTG 
    TGACCCATGT TGTCTATGAG CGAAATAATT TTTGATTTTA TAACTATTAA 
    ATTTAACATG AAAAAGGTGT ATAGTATCAA ATCTAAATCT AAATGAGTAT 
    ATGTGATTTT GGGGGAAATC ACACACCATT GTCATTTGTA TATTATTATA 
    TGGTAGACCA ATGTTATATA TATTTTTAAT CGATCGAGGT AGACCAATGT 
    TATGTAAAGT AGAAACAAGA CTGAAAAAGG CGTAGAGAGC AATAAGGTCG 
    TAATCAATTT GTAAAACAGA CTAGAAAATT CCAACGGAAA TCCAATTTAC 
    ATTCCTCTTC ACGACAAAAC ACTTATTAGG TTCTGATGTG TAAAAATGGT 
    CTTAAAGCCA TATTTTTGAA AATGACTCAA ACGAAAGGAA ATGAAAGAAA 
    AATATATATT TTTATTACTA AAAAGCAAGA GAAAACAAGT GCTAGAGCTA 
    GCCTAGAGAT CGATCCA

AT2G47560.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: AtL5 (TAIR:AT3G62690.1); Has 10475 Blast hits to 10453 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2615; Fungi - 944; Plants - 5266; Viruses - 125; Other Eukaryotes - 1525 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47570.1

Model type
Protein coding
Short Description
Ribosomal protein L18e/L15 superfamily protein
Computational Description
Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L18e (InterPro:IPR000039); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G27850.1); Has 755 Blast hits to 755 proteins in 295 species: Archae - 15; Bacteria - 0; Metazoa - 328; Fungi - 154; Plants - 126; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Link
InterPro Scan - TAIR