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53-3259-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30382327 [Map]; Strand: c
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 5846; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -1364; Region: intergenic
    Flanking Genome Sequence: 53-3259-1 - 5-prime edge 
    CAACTACATC TATAAATATT ACTTTATATT TGGTTTAAGT CGAGTTAATC 
    AAGTGAGTGG TGCTAAACCA TTTTCCTACA TATATTACTA TTACACTTAA 
    TTCGTGTTAT GATAATTATT AGTAGCTGTT AAATTCTCAC ACTATATATT 
    AAATAATAAT TTTGTTACNT TCGATTTTCT CAAACTAAAA TCTATTTAGT 
    TGTTTGTTTT TGGATCAGCA TACGTATTTT CTTAAAAGTC ATGCACAAAT 
    TTGGCTACCG AACTTTATCA AAATCTCAGN GGCCTTCCTT TTTTCCTTTC 
    CCCCCCCCCC CCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30382443 [Map]; Strand: c
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 5962; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -1248; Region: intergenic
    Flanking Genome Sequence: 53-3259-1 - 3-prime edge 
    TGTAGTTGGT TGTATTTTTG CAAGCTTTGG TACTCGATAT CTAAATTTTT 
    AATGGAAAAA TTAGTCGAGT GGTAATTCGT TATATATAAG AAAATATTTT 
    GTTTGTAATT GTGCAAACTT TAGCATTGGA CATCTAACTA TATTCTGAAA 
    AATCAGCGGA ATGATAAAAG TTCGGATTTT CCTTCTTTTT ATTTAAGTAA 
    ACATAATTGG TGTTCTGAAA ACCAAAAGAA GGAAGAAGGC AATTAAGATT 
    TGTTAAAGTT CGTCACGATA TTGATGTCAA GAAAAAAAGG AAAAAAAAAA

AT1G80831.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80840.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 40
Curator Summary
Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
Computational Description
WRKY DNA-binding protein 40 (WRKY40); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 18 (TAIR:AT4G31800.2); Has 3306 Blast hits to 2859 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3292; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR