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53-3272-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23168592 [Map]; Strand: w
      • AT5G57180.1 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon1 (CDS)
      • AT5G57180.3 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon1 (CDS)
      • AT5G57180.2 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3272-1 - 5-prime edge 
    CTCCGAATCA TCAAATTCAC CACTCGCAAT CTCAACGAGA AAGCCAAGAA 
    CACAACGCAA AAGACCAAAC CAGACTTACA ACGAAGCAGC TACTCTTCTC 
    TCTACTGCTT ACCCCAACAT CTTCTCCTCA AACTTGTCCT CTAAGCAAAA 
    AACTCACTCT TCATCAAACT CTCACTTCTA CGGGCCATTG CTTAGTGACA 
    ACGACGAAGG TTCTGATTTG CTTCTTCCTT ATGAATCAAT CGAAGAACCT 
    GATTTTCTGT TTCATCCAAC GATTCAAACG AAAACAGAGT TTTTCTCAGA 
    CCAGAAGGAA GTTAACTCCG GTGGAGGTTG CTACGGTGGT GAAATCGAAA 
    AGTTTGATTA CTCCGACGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23168476 [Map]; Strand: w
      • AT5G57180.1 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon1 (CDS)
      • AT5G57180.3 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon1 (CDS)
      • AT5G57180.2 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3272-1 - 3-prime edge 
    ATTCGGAGAT TGTTGATGAT GGTGAAGTAG CTCTTGTTGT TGTTGTTGAG 
    GAAGATGGTG GTGGTGATTT CACTTTTTCT AACTCGAAAC TATATGCTGC 
    TGCTCCTCCT CCTCCGCTGC TTAAACACGC CGACATTTTT TTTGTCCGGT 
    GAAATCGGAA AAGAAACAAG ACCAAAACTT TGAAGATTGT AAGAACTTTT 
    GTGAGTGAGA AGAGAGTGAT GAAATTAAGA TTTTTGCCTT TTGATTAAAG 
    AATTGTGTTT AATTTTAAGA TAATAATAAA CCCTTAAAAC CCACTGAAGA 
    AATCTTTTTT TATTTGGTGA GAAAATACAA AATTGAAGGG GGAAAAAAAG 
    ATCAAAACTT TAGGGAAAGA GGAAGATTCT GCTAACAAAT GTTCATCATT 
    TGAAAGAAAG AGCTAANAAA ACCCATTTGG AATCTGANAT TTATGTGTAT 
    GAAAACCAAA AGAATTGGCC AACGAGTGAG GTTTTACAGA AAGAAGCTAA 
    TTGGTTTGTG AAGAGGGAGA GAGAGATTGG AGGAGAAAGA AGAGTCACGA 
    GATATATAAG AGGAGAAAGA TTAGGGTTTT AGTGAGAGCT TAGTAACAAA 
    CAAAGGAGAG TTTAGTAAAT AAATAGTGAA GAGCGTTTTT TTTTTTTTTG 
    GTTNGGGGGN TTTTTAACTT TTAAAAAAAA AATTNNGGGA AAANCAAAAA 
    ANGGGGGGGA AAAAAAAAAN AA

AT5G57180.1

Model type
Protein coding
Short Description
chloroplast import apparatus 2
Curator Summary
Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description
chloroplast import apparatus 2 (CIA2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.2); Has 1391 Blast hits to 1370 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 7; Plants - 1340; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57180.2

Model type
Protein coding
Short Description
chloroplast import apparatus 2
Curator Summary
Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description
chloroplast import apparatus 2 (CIA2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 1820 Blast hits to 1799 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 7; Plants - 1718; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57180.3

Model type
Protein coding
Short Description
chloroplast import apparatus 2
Curator Summary
Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description
chloroplast import apparatus 2 (CIA2); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 102 Blast hits to 81 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 7; Plants - 54; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR