1. Home
  2. Mutant Lines
  3. 53-3274-1

53-3274-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13865205 [Map]; Strand: c
      • AT4G27830.1 - [+] show detail - beta glucosidase 10
        Distance: -705; Region: promoter
      • AT4G27840.1 - [+] show detail - SNARE-like superfamily protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 53-3274-1 - 5-prime edge 
    NATGGGTAAT TATCTTNAAT NATCTAAGTT ATGNGTGGCA TGAATGTTTA 
    AAAAAAATAT CCGGAGGNGT NGGTTCCAGG GTTTAAAAAG AAAGNCTGGG 
    TTACACAGTT TGTGATGATG TTTTTGTTTG TGTTTTTTTG AAGTTGCTCT 
    TCANGAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13865327 [Map]; Strand: c
      • AT4G27830.1 - [+] show detail - beta glucosidase 10
        Distance: -827; Region: promoter
      • AT4G27840.1 - [+] show detail - SNARE-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3274-1 - 3-prime edge 
    TCGATGCATT GAAACCCTTG ACAAATCCAA AGCCAGATTC CAAAGAGAAC 
    AAGGCAGATA CAGAGATCAA ACATCAAAAC AATCCAAACA TGTTTCCTCC 
    ATATCTGTTT TGCCTTTTGT CTATGATGAT GATCATGAAT CAAACCATTC 
    CTCACTCCTT TACCTCCTCC TCCTAGGTCC ATCTTCATCT

AT4G27830.1

Model type
Protein coding
Short Description
beta glucosidase 10
Computational Description
beta glucosidase 10 (BGLU10); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 9 (TAIR:AT4G27820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27840.1

Model type
Protein coding
Short Description
SNARE-like superfamily protein
Computational Description
SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52990.1); Has 279 Blast hits to 279 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR