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53-3293-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18273718 [Map]; Strand: w
      • AT1G49360.1 - [+] show detail - F-box family protein
        Distance: -4270; Region: intergenic
      • AT1G49370.1 - [+] show detail - pseudogene, similar to OSJNBa0072F16.8, blastp match of 42% identity and 6.6e...
        Distance: 1332; Region: intergenic
    Flanking Genome Sequence: 53-3293-1 - 5-prime edge 
    CCTCCTGAGC TGTTGTCAAA TAGGAGCAAC ACCAAACCCG CACGAGAGCC 
    CATGTTATAT GGGGTATCTA TCCCGAATTA TAAAATTTAA ACTTAAAATA 
    TAAATATACT AACAGTTTAA TATTAATTAG ATTATACAAG AAAAAAAAAG 
    TTAAAACATA AAATTTGACT CATCTATTAT AAACTTATAT AGTTATTTCA 
    ACACATGAGA TGGCCAAATT GGAGTAATAA CTAGNGGGTT TAGTGGAGTT 
    TTAGTTTTCC TTTCTCCAAA ATTGGTTTAG CTAGNGGAGC TCGTAGAAAC 
    AATAACATTA ATAATAAAAG GAAGGATTCT ACTATTAACA ATTAACTCGC 
    ACTAATCTAA AAGGAGGGTT GAATTTAGAA TTAAAATCAC ATCAGTAATA 
    ATATTTCTCT CCATCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24476842 [Map]; Strand: c
      • AT1G65800.1 - [+] show detail - receptor kinase 2
        Distance: 127; Region: intergenic
      • AT1G65810.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 201; Region: intergenic
    Flanking Genome Sequence: 53-3293-1 - 3-prime edge 
    ACCAAGCTTG AGAATCCTTA CAAAATCCCA CTACTGCGAT AGCATTATAT 
    TTATAGTGAA GAAAAATTGT GATCTAAGAT GATACACATG TTCAATGATC 
    ACTGATCAAT GACCAATTTA AGTATGTCTG ACAAATAGCA AAAGATAATA 
    CGAGAAAAGT CACAAAAGGA CGCAAAAGAA GCAGACACAA TGTTTTAAAA 
    GACCAAAAGG AATACCAAAT TGTCTGCTTT TGACAAAGAA ACAGTCACAT 
    TTCACTTAGG ATCTTTGGGG TTAGATGTTG AAAGTTGAAC CTTTCTTCTA 
    ATCTTCCACA GTTTCTTTAG CTTCACTTGT TTCCTGCAAA ACAAATAAAC 
    AGAGAATATA ACTGAAACTG CTTTTATATG AAATCTCAAA GACTCATCAA 
    ATAAGCCTTA CTTGATAGGT TTAGGACTCA TAGTTTCCTC CTCCACGACA 
    CTGAGCAACG CAAATGATCT CGAAACATCG CTTACAATAT CTTTCTTTGA 
    ACAAGAATTG GAATCAACCG GCCATTGCAT T

AT1G49360.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G57790.1); Has 351 Blast hits to 349 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49370.1

Model type
Pseudogene
Computational Description
pseudogene, similar to OSJNBa0072F16.8, blastp match of 42% identity and 6.6e-73 P-value to GP|21739229|emb|CAD40984.1||AL606460 OSJNBa0072F16.8 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT1G65800.1

Model type
Protein coding
Short Description
receptor kinase 2
Curator Summary
encodes a putative receptor-like serine/threonine protein kinases that is similar to brassica self-incompatibility (S) locus. expressed in specifically in cotyledons, leaves, and sepals, in correlation with the maturation of these structures.
Computational Description
receptor kinase 2 (RK2); CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), Protein kinase, ATP binding site (InterPro:IPR017441), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), S-locus, receptor kinase (InterPro:IPR022126), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: receptor kinase 1 (TAIR:AT1G65790.1); Has 122202 Blast hits to 120473 proteins in 4562 species: Archae - 111; Bacteria - 13838; Metazoa - 44423; Fungi - 10348; Plants - 34995; Viruses - 424; Other Eukaryotes - 18063 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G65810.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G65780.1); Has 6257 Blast hits to 5371 proteins in 1056 species: Archae - 197; Bacteria - 1787; Metazoa - 1336; Fungi - 1200; Plants - 672; Viruses - 106; Other Eukaryotes - 959 (source: NCBI BLink).
Link
InterPro Scan - TAIR