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53-3294-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26492310 [Map]; Strand: c
      • AT5G66310.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -928; Region: promoter
    Flanking Genome Sequence: 53-3294-1 - 5-prime edge 
    TGTGCATGGC CCTCTAATTT ATTACATGTC TATATCTCCC AAAGATCCAC 
    TTTGACGTTA ATTTTGTAGT ATATAGTGTA CACTGTCACG GAATTAGAGA 
    ACGATTTTTT CTTTAAAAAA AAGAATACCC ATCATATAAT TAATATATAG 
    TACAAATTAT TGCATTGTTT TCAATATTAA ACGATACAAA AAACACAAGT 
    CTCTTCAATA CTTCAACTAC CGACCACGAT ACAGATTAGT ATTCATGCAT 
    GAACCAACAT CTGTATCCAA TAAATCCTAA CTTGAATTAC CCTGGTTTAT 
    ACTCTTTTTT GTCAAAACAA TTGATAAAAC AACAAGACAT TAAAAAATAA 
    AATCAAGTAA CTTTCTTAAA CTAGTTTGGA AAAATGAAAC AGGTCATTGT 
    TACATTATAA GGCAAATGTA AAAGTGGGCA TCGAAGCTCT TCTTTATATA 
    AATGGACTTA GGGTGTAAGT AAGTAAAAGA GAAGTGCACA TGCATTGCCT 
    CAGCGATATA GTATTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26492424 [Map]; Strand: c
      • AT5G66310.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -1042; Region: intergenic
      • AT5G66320.1 - [+] show detail - GATA transcription factor 5
        Distance: 3531; Region: intergenic
    Flanking Genome Sequence: 53-3294-1 - 3-prime edge 
    AACATGCACA TGATGTGGAT GTGGACAAAA CCTAACAGTC TCTCAATTAT 
    GAGATGTCAC ATGATGATGC GGACAAGTCA ACGCTTCTAC TTCCTTTTAC 
    TCTCTTTTTT TTTCTACCTT AGGGCCTCGT CACAAANGGG TCGGCTCTTC 
    TCATTAAAGC CCATATTATA ATAATTAAGC CCACAAGATA GGCCTTAGTA 
    CACCGACAGA TGAAACCCAG CCACTCGGNC CTTTTTNTAT AAACNAAATT 
    AGAGAATCGC AAAAACACAT CCCAAAAGAG TCAAAACAAA

AT5G66310.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881), Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G51150.2); Has 12086 Blast hits to 11258 proteins in 438 species: Archae - 14; Bacteria - 210; Metazoa - 5156; Fungi - 1590; Plants - 1989; Viruses - 17; Other Eukaryotes - 3110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66320.1

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR