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53-3298-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18122525 [Map]; Strand: w
      • AT4G38820.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bac...
        Distance: -550; Region: promoter
      • AT4G38830.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 26
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3298-1 - 5-prime edge 
    CCGTTAACAC CCCTTACGCC GTCAACCTCG ACCGCCTCAT CTCCTCTTTA 
    TCATCTCTCC GACGTAACGT TAACGGATTT TACAACATCT CAGTGGGAGA 
    CTCCGATGAA AAAGTCAATT CAATCTCACA GTGTAGAGGC GATGTCAAAC 
    TTGAAGTTTG CATCAACTGC ATCGCAATGG CTGGAAAAAG ACTTGTCACG 
    CTGTGTCCGG TTCAGAAAGA GGCGATTATT TGGTATGACA AATGTACGTT 
    TAGATACTCA AACCGGACAA TCTTCAATAG ATTGGAGATT TCCCCTCACA 
    CAAGTATAAC GGGAACAAGA AACTTCACCG GAGATCGTGA TAGTTGGGAG 
    AAATCTTTAA GGGGTTTACT CGAAGGGCTT AAAAACAGAG CCTCTGTTAT 
    TGGTCGGAGC AAGAAGAATT TTGTTGTAGG CGAAACGAGC GGGCCTTCAT 
    C

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2925440 [Map]; Strand: c
      • AT3G09520.1 - [+] show detail - exocyst subunit exo70 family protein H4
        Distance: 0; Region: exon1 (CDS)
      • AT3G09530.1 - [+] show detail - exocyst subunit exo70 family protein H3
        Distance: -862; Region: promoter
    Flanking Genome Sequence: 53-3298-1 - 3-prime edge 
    GNGGCGAGAT CAGAGTATCG GTNTCCAGAC TGCTGGNTGC CGNTCTATCT 
    GCGAGTTTTA CANCACTGAG AGGTTCTGCT ATCTTGGGAG AAGGCGATGG 
    CTGCCNAGAA ACCTGAGCTC AGTTGTCCGA TTTACCCCTG ATGATATNGA 
    AAACTATTNG TCTGATTTGT TCATAGAGAA GGGTTGTTCG GGGAATT

AT3G09520.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H4
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H4 (EXO70H4); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: stem, sperm cell, stamen, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H3 (TAIR:AT3G09530.1); Has 837 Blast hits to 827 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 71; Plants - 622; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09530.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H3
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H3 (EXO70H3); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H4 (TAIR:AT3G09520.1); Has 786 Blast hits to 774 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 29; Plants - 616; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38820.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38830.1

Model type
Protein coding
Short Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 26
Curator Summary
Encodes a cysteine-rich receptor-like protein kinase.
Computational Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (CRK26); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (TAIR:AT4G21410.1); Has 124218 Blast hits to 122701 proteins in 4579 species: Archae - 106; Bacteria - 13898; Metazoa - 45472; Fungi - 10958; Plants - 35042; Viruses - 435; Other Eukaryotes - 18307 (source: NCBI BLink).
Link
InterPro Scan - TAIR