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53-3302-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23903609 [Map]; Strand: w
      • AT5G59240.1 - [+] show detail - Ribosomal protein S8e family protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G59250.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -283; Region: promoter
    Flanking Genome Sequence: 53-3302-1 - 5-prime edge 
    TTCAGCAAAA CAGAGAATCA ACAAGTCATC AATACACCAC TATTGAAGAA 
    GAATTTCTCG ACATTGATGC TAGAAAGGTT ATATCTTTGC CAGAAATCGA 
    ACGAGAAAGA AACNGGAATT GAAAAAGTAC CCATGATTTC AAAAGCGTTT 
    GATTCAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23903498 [Map]; Strand: w
      • AT5G59240.1 - [+] show detail - Ribosomal protein S8e family protein
        Distance: 0; Region: exon2 (CDS)
      • AT5G59250.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -394; Region: promoter
    Flanking Genome Sequence: 53-3302-1 - 3-prime edge 
    AAGTTTTGCA GGTATCTCTC GTGATTCAAT TCACAAGAGA CGTGCCACTG 
    GTGGTAAGCA AAAGATGTGG AGGAAGAAGC GAAAGTAAGC TTTTTAATCT 
    TCCCCTCCTT AAATATTGAA TCATAGAGTA GATTGGAATC AAAATGAATC 
    ATGAGCNTTG TCTTGTTCTT TAATTTTGGT TGTTTCTACA TGCTTGATAA 
    CTTTGTATAA CTTCTGGTTG AAGCAAAATT GATGATCACA TAAACTAACT 
    TTGGTTATCT CTTATAAAGG TATGAGCTTG GAAGACAACC AGCTAACACT 
    AAGCTGTCAA GTAACAAGAC AGTGAGGAGG ATCCGTGTGC GTGGTGGGAA 
    TGTAAAGTGG CGAGCTTTGA GGCTCGATAC TGGAAACTTC TCGTGGGGAA 
    GTGAAGCTGT GACCCGCAAG ACTAGGATCT TGGATGTGGC GTACAATGCA 
    TCAAACAATG

AT5G59240.1

Model type
Protein coding
Short Description
Ribosomal protein S8e family protein
Computational Description
Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59250.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G17010.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR