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53-3311-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16561790 [Map]; Strand: c
      • AT4G34710.1 - [+] show detail - arginine decarboxylase 2
        Distance: 0; Region: exon1 (CDS)
      • AT4G34710.2 - [+] show detail - arginine decarboxylase 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3311-2 - 5-prime edge 
    GATTCAAAGA TGCTGAGTAT ATATCATTGG CTCTGCTTGG GAGAAAACTG 
    GCGTTGAATA CTGTGATTGT GCTTGAGCAA GAAGAAGAGC TTGATCTGGT 
    TATTGAGCTG AGCCAGAAGA TGAATGTGAG GCCTGTCATT GGGTTAAGGG 
    CTAAGCTGAG GACTAAGCAT TCGGGTCATT TCGGATCAAC TTCTGGTGAA 
    AAGGGTAAAT TTGGATTGAC TACTACTCAG ATTGTTCGTG TGGTGAGGAA 
    GCTGCGTCAA TCTGGTATGC TTGATTGTCT CCAGCTTCTG CATTTTCATA 
    TTGGTTCACA GATTCCGTCG ACTTCGTTGC TCTCTGATGG TGTCGCCGAG 
    GCTGCTCAGC TTTACTGTGA ACTTGTGCGT CTTGGTGCAC ATATGAAAGT 
    TATTGATATC GGTGGTGGTT TGGGGATTGA CTACGACGGG TCTAAATCTG 
    GAGAATCGGA TCTCTCTGTT GCTTATAGTC TCGAGGAGTA TGCTGAAGCT 
    GTTGTAGCTT CTGTTCGGGT TGTGTGTGAC CGGAGCTCAG TGAAACATCC 
    GGTGATATGC AGCGAAAGCG GTAGAGCGAT AGTCTCTCAT CATTCTGTGC 
    TGATCTTTGA AGCTGTTTCA GCAGATAAAC CAATGGTTCA TCAAGCAACT 
    CCCGGCGATA TTCAGTTCCT GCTTGAAGGT AATGANGAAG CTCGAGCCA

AT4G34710.1

Model type
Protein coding
Short Description
arginine decarboxylase 2
Curator Summary
encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.
Computational Description
arginine decarboxylase 2 (ADC2); CONTAINS InterPro DOMAIN/s: Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Arginine decarboxylase (InterPro:IPR002985), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644); BEST Arabidopsis thaliana protein match is: arginine decarboxylase 1 (TAIR:AT2G16500.1); Has 7853 Blast hits to 7777 proteins in 2122 species: Archae - 112; Bacteria - 5255; Metazoa - 102; Fungi - 32; Plants - 645; Viruses - 2; Other Eukaryotes - 1705 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34710.2

Model type
Protein coding
Short Description
arginine decarboxylase 2
Curator Summary
encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.
Computational Description
arginine decarboxylase 2 (ADC2); CONTAINS InterPro DOMAIN/s: Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Arginine decarboxylase (InterPro:IPR002985), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644); BEST Arabidopsis thaliana protein match is: arginine decarboxylase 1 (TAIR:AT2G16500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR