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53-3319-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 130707 [Map]; Strand: c
      • AT4G00305.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -843; Region: promoter
    Flanking Genome Sequence: 53-3319-1 - 5-prime edge 
    NTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAAGACT CAAGACTCAA GAACATAATG GAGATCGATA 
    ACAAATCATT CATTTCAGAA TTTACGTAAT CCAATGCTCC ACCTTATTGC 
    TTATTTGAGA ATATATAAAC TGTATCTAGT TTCTGATTTC ATGTTTTGGT 
    GAAAAAGAAA AGAAAATCTA ATGGCCTCCA TATATTAGAT TTATGATGTA 
    ATGACTTGTT GATAGATTCG GAGGTGAGGA TCATGCGGTA CGGTTACCGT 
    ACCATTCTGG CTTTGCTCAT CATCAGGACA GGACATGACA TCACCGCGAC 
    TTTTGACCTT GTATAGATTT GTTTGATCAA GTATTCATTA CTTTTTTTAT 
    AAAGTTATAA AATATCAAAC AAAGAGACAT CAATAATAAC ATGAACAATA 
    ACATGAAGAA AACATTTCAC TCCGAAAATT ACATATTGAG TCTCTCCATT 
    TATCATTGAA TAAAAATACG CCAGATAGAT ACACATATAT GTAAACAACA 
    CATTGACACC CTTATGAAAA TTCCATTGTA TCATCAAAAG TAGTAAATAC 
    TCAAGAAGGA AGTCCACTGT TAATACGTAT ATTCAACAAA CAAAAGCATC 
    TTCAAGCCTT TCTTGCTGTA AATTGATTCC CTGACTTGGA ATTATCTTCA 
    AGCACGTNCA TGGACAGCTT TGTCCAGCCA TACTGATCCT TAACTCTCTT 
    TCTTTGAGTC ACAATGTAGA AGCTCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5232897 [Map]; Strand: w
      • AT4G08280.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 701; Region: intergenic
      • AT4G08290.1 - [+] show detail - nodulin MtN21 /EamA-like transporter family protein
        Distance: -6009; Region: intergenic
    Flanking Genome Sequence: 53-3319-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGAAAGGTAA CCAATAGTCT CGAAAGTTCG AATTCGATAC GAGTTAGGAA 
    CCCACATCGA TAACTTATTA GGTTATACAT AAGAGATATA AATCAATCCA 
    CTCTAAACGT GTAATCAGGT TAATCTGTCC ATCACCAATG ACGAAAGAGA 
    AACAGATTAT GCGAAAATGC ATATTATTTG TACCAACTAA GAGGTACACG 
    AAGGTATGCT CAAAAAGCTA GCTAATTGCT TTATCACCCA CCCTATAAAG 
    AATGATAAGA AAAAAAAAAN GANANNGATT CTTTCANNAT CCAACCCTTT 
    CNTCAANCTT TGGGTTCANC TAACCAAAAA NATTTTTNGT TTTTNNCNAA 
    TTTTAAANCN TGANNANNGT TTTNGNTCAA AACNGATTNT TNCCACTAAN 
    CTNTAANCCT NNGGNTNTCN CANCNCATTA NTNTANCTAA AANATCCACC 
    CNCNGNTNGN NCGATAAAAA TTTTTTTTAN TTTGTAAAAA ACTTATCAGG 
    TAAATACNTT TNCAAGGACG GNGACAAGNG ANNAAAATTT GTNNNNNATN 
    CNGGGCCCNT TTTAGGGNGG GACCTTCAAT NNTTTCNCTA ANCACAANNG 
    AACCATCTNG TTTGGNCNGA TTTNNNNNTA GGTTNNCANA NNNGAAGGGN 
    NNANNGTNAA AAAACNAANG ACTTTTNTNN TTTNNCCTNA NAAANCCCNN 
    NNNNGGGCNG NNNNCCNCNG

AT4G00305.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: brassinosteroid-responsive RING-H2 (TAIR:AT3G61460.1); Has 6452 Blast hits to 6437 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 1579; Fungi - 466; Plants - 3776; Viruses - 3; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G08280.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Computational Description
Thioredoxin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin like (InterPro:IPR008554), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G08290.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G39510.1); Has 3333 Blast hits to 3320 proteins in 592 species: Archae - 15; Bacteria - 1495; Metazoa - 4; Fungi - 2; Plants - 1226; Viruses - 0; Other Eukaryotes - 591 (source: NCBI BLink).
Link
InterPro Scan - TAIR