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53-3333-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26118198 [Map]; Strand: w
      • AT5G65340.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: -3709; Region: intergenic
      • AT5G65350.1 - [+] show detail - histone 3 11
        Distance: 1013; Region: intergenic
    Flanking Genome Sequence: 53-3333-1 - 5-prime edge 
    CCACCAACGA TGATGATGGT AGCACCAAGA AAGAGAATCT CAGTTCTGTA 
    ATTTGTACAC TACTAATGGC AATCTCTGTC TTTGCTTCTC TATATTCGCA 
    TACCCATAAC TACAAATTCC GAACCCTAAA GTTATATATC AACCGCAGAA 
    CAAGTACCAG AAGCAATACA AAGAGAAAAG ACGCTCTTAT ACCTATAAGA 
    AGAAGAAGAA GAAGAAGAGG ATGCGAGATC GTTGGATCAG TCCATGGTTT 
    CCAAAACGCC ATCTTTTTCG AAAAAGAGCG TTTTGGCTTC TTCGGCTTCT 
    TCGGCTTATG TATGTATTAG CCTTCGACTT GAGTATTTAT AAGCAAAAGG 
    CTCTTCGACT AAAAGAAAAG GAAACTTCCG ATTATTTCCT TTTTTCTTCA 
    ACCGTTGTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26118082 [Map]; Strand: w
      • AT5G65340.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: -3593; Region: intergenic
      • AT5G65350.1 - [+] show detail - histone 3 11
        Distance: 1129; Region: intergenic
    Flanking Genome Sequence: 53-3333-1 - 3-prime edge 
    GTTGGTGGTA CAGATTCTTC TCTCTTCTTT GTCCTTGGTT TATTTGCTTT 
    TCTAATTTCA GGCTTCTTAG ACCAAATAGG CAATAGATTG ATGGGAGAAG 
    TTAAAAGGTT ATGAATTTGG ATATGGTAAT AGTCACCTTA ACATATGTGC 
    AATCTTTTTA ATATGTTGTA GTTTTTGGCT GGGCTCAAGG AGGACGAGTT 
    TTTGCTTTGG ATAAGGTAAA GAAGCTGGAT GGGCTCAAGG AGGCCGAGTT 
    TTTCGACCAT ATCACAAGCT TTCATGGTGT AGGCAAAGTC CGTATGAGTC 
    TTTGGCTTTG TATGTTCTAA CAAGGAAACA CTACTTAGGC TTATAAGATC 
    AGGATGCGGT TTAAGTTCTT ATACTCAATC ATACACATGA CATCAAGTCA 
    TATTCGACTG CAAAACACTA ACCAACCTTC TTCTTGCTTC TCAAAGCT

AT5G65340.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF617
Computational Description
Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT2G22460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65350.1

Model type
Protein coding
Short Description
histone 3 11
Computational Description
histone 3 11 (HTR11); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR