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Mutant Lines
53-3337-1

53-3337-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 1957348 [Map]; Strand: c
- AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
  Distance: -951; Region: promoter
- AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon2 (CDS)

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCT TGGTGAGTAC TGCTTGCAAA CCCGATGTGT 
GGACTATGAA TATCATCCTT AGTGTGTTTG GAAACATGGG TAAGATAGAC 
ATGATGGAGA GCTGGTACGA AAAGTTCAGG AACTTTGGGA TTGAGCCAGA 
GACTCGGACT TTCAATATTT TGATTGGTTC TTATGGGAAG AAGAGAATGT 
ATGATAAGAT GTCGTCTGTC ATGGAATACA TGCGAAAGCT AGAGTTTCCG 
TGGACAACAT CAACCTACAA CAATATCATC NGAGGCGTTT GCGGATGTTG 
GTGATGCAAA GAACATGGAG TTGACATTTG ATCAGATGCG TAGCGAAGGT 
ATGAAAGCAG ACACAAAGAC CTTTTGCTGT CTCATAAACG GATATGCCAA 
TGCCGGTCTT TTCCACAAGG TGATAAGTAG TGTTCAGTTG GCTGCTAAGT 
TTGAGATACC CGAGAATACT GCCTTTTACA ACGCGGTGAT ATCAGCGTGT 
GCTAAAGCAG ATGATCTGAT AGAGATGGAA AGAGTGTACA TAAGAATGAA 
GGAGAGACAA TGCGTATGCG ATTCAAGAAC GTTTGAGATC ATGGTCGAGG 
CGTATGAAAA AGAAGGTATG AATGATAAGA TCTATTACTT GGAACAAGAG 
AGGCAAAAGC TACCAGCCNN GNCCNTCGAC CACCNNNNNN CCNNTTNTNA 
ANNANNNGNN TTNTNNNNNA T

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 1957346 [Map]; Strand: c
  - AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
    Distance: -949; Region: promoter
  - AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 53-3337-1 - 3-prime edge
```
ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
CCACCAACAT ATCAGACAAA ACTTTCTCCA TCTGATCAAA CCTTCCGACC 
CTACCGTACC CACTTAAAAC TATGTTCTGG GTCACAGTGT TTGGAGTTAT 
CAAACGCTCG TCCATTTCCT TGTATAACGA ATCCACCAAG TCAAACTGAG 
AAGCATCCAC ACAAGCCTTG AGCAGAGTGC TGTACGTGAA AACATCAGGT 
TGGCATTGAG GAAAGCT
```

AT3G06420.1

Model type: Protein coding
Short Description: Ubiquitin-like superfamily protein
Computational Description: autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G06430.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link: InterPro Scan - TAIR