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53-3347-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 463562 [Map]; Strand: c
      • AT5G02260.1 - [+] show detail - expansin A9
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3347-1 - 5-prime edge 
    GTGATAAGGA TAGATGGGTT TCCAGGAAGA CACCATCCTG GATCATTGAT 
    ACACTTAAGC TCAAAGCAAG AGCCACAACT CAAACCATTG TTGAATAAGG 
    CAGTGCTTAA AGCCGCCGTG TTCACTCCGT AACCTTGGCT ATACAAATTC 
    CCGTACCCAC ACGCACCACC TATACAATCG TATATTCAGT GAATAGTTGA 
    AACATATTGT GTCTACCATG AAAAAAAAAA NAAACGGAGG AGGNGGGANA 
    NANANAGTGT GTGTCCCCAT AGNGCCGGAA GCGTCAGNTT CACCGTAAAA 
    GGGGGCGNGA GCNTTGATCC ANGGACCNCC GGNGTAAACT CCGGGGATTT 
    TGGCGTNGGC CGTAAAGGCA GTANTCNCCN TANCCGCCNT AAATGTAATT 
    ACTTTCNCCG CCNTTTGTTG ACCTTGGTNC GGAAAAAAGG TTTNGGTTTT 
    TGGGAAAANA NANANANAAA ANAGGANTGT GAAAGGGAAA GGGGAACCTA 
    GGAAGGCTAC TTATGGNGGC TNCAAATGAC TTTACCCCTT TTTTTAATTA 
    TTTTNCTAAT TAAAGTATTC TTTTATTAAT AAAAATTNTC AAATAAAAAA 
    AAACTTTTTN GGAATNCCGN NTTTTTTCCC TCGGGGATNT AATATAAATT 
    TATTCCACCG AATTACNANC CN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 463687 [Map]; Strand: c
      • AT5G02260.1 - [+] show detail - expansin A9
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3347-1 - 3-prime edge 
    GCCACTAATT TCTGCCCTCC TAACTTTAAT CAAGCTAGCG ACAATGGTGG 
    TTGGTGTAAT CCTCCTCGTG AGCACTTTGA TCTCGCTATG CCTATGTTTC 
    TTTCCATCGC TAAGTATAAG GCTGGTATCG TCCCCGTCTC TTACCGCAGG 
    TAAATTCATC TCCCTCTCTT ACTCTATGCT CTGTTTATGT CTCTTCTCTG 
    TTTTTTTTCT CTATNCTCTG TTTTTTCTAC TTATAAGTTA TTTCTCTTAA 
    TTAAGAGTTG CAATCTCTGA ATTTTTTACG TAGAAAATAA GAAAATTGAT 
    TTTATCGAGT CTTAATAGTT AAAAACTCCT AACTTAAAAT ACATTNGTTC 
    TTAATATTTT TCTAGCGAAA ATCCTTTTTT TGTTTGGTTA GCTTATTTTC 
    GAGATCGATC CTAGGAAATC GCCTAATGTT GCTTAGTCAA AGATGTTAAG 
    TTATTTCATT TGCTTTAGAA GTAACCTTTT TTAGTAATTA GGATCCGAAT 
    GGTAAGAATC TGTGAGCCTG AAG

AT5G02260.1

Model type
Protein coding
Short Description
expansin A9
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational Description
expansin A9 (EXPA9); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: Barwin-like endoglucanases superfamily protein (TAIR:AT2G37640.1); Has 2170 Blast hits to 2166 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 2091; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR