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53-3369-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1156740 [Map]; Strand: w
      • AT4G02650.1 - [+] show detail - ENTH/ANTH/VHS superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3369-1 - 5-prime edge 
    ATGATGACTA TCCAGCGGAG GACAAGTACA TTAGAGAGAT TTTATGCCTA 
    ACTTCTTACT CACGCAATTA CGTAAGCGCT TGTGTGGCAA CGTCTCTCGC 
    GACGGCTCAA CAAGACCAAG AACTGGTCGG TTGCTCTCAA AACCTTGATT 
    TTGATCCAAC GGTTGCTAAC AGATGGAGAT AGAGCCTACG AGCAAGAGAT 
    CTGCACTTAC TTCAAATCAC AACCCACTTG GCTCCTCATT CTCTTCGTTC 
    TGGGGTCAAT CTCAATCTTC AAATTCATCT TCACCCTCCT CAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3056744 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -3970; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 4231; Region: intergenic
    Flanking Genome Sequence: 53-3369-1 - 3-prime edge 
    CTTCCCGGGA GGTCACCCAT CCTAGTACTA CTCTCGCCCA AACACGCTTA 
    ACTGCGGAGT TCTGATGGGA TCCGGTGCAT TAGTGCTGGT ATGATCGCAT 
    CCGTTAGTAT ATGCAATGCA ATCGTATATA TTCTTTTTTT AAGTCTTGAT 
    GAACCGTTCG CCGTGGGTCC CACCCGCCAT GTAGGGATAC CCTATCTAGT 
    CTTAACGAGC TTTGATGCAT GAAAAATATT CGAAAACAAT GCTTGAAAAA 
    GTAATTTTGG GTCCGTAATA TAGCACAAAT CACGAAAATG CCCGAAAAAG 
    TACTTAAAGG TCAAAATTTG GAGTCGACAA AAAGTCAATA CAAAATTTCC 
    ATTGTCTTGC TTCTTTCGTC GGAGGGCTCT CTTTGGGCTT TCCGAAAAGG 
    TATCACATGC CAAGTTTGGC CTCACGGTAT AGAAG

AT4G02650.1

Model type
Protein coding
Short Description
ENTH/ANTH/VHS superfamily protein
Computational Description
ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT1G03050.1); Has 1450 Blast hits to 1384 proteins in 224 species: Archae - 6; Bacteria - 69; Metazoa - 513; Fungi - 180; Plants - 407; Viruses - 6; Other Eukaryotes - 269 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06474.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retroelement pol polyprotein
Link
InterPro Scan - TAIR

AT4G06477.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.1e-112 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR