Home
Mutant Lines
53-3373-1

53-3373-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 25366682 [Map]; Strand: w
- AT5G63270.1 - [+] show detail - RPM1-interacting protein 4 (RIN4) family protein
  Distance: -733; Region: promoter
- AT5G63280.1 - [+] show detail - C2H2-like zinc finger protein
  Distance: -349; Region: promoter

TGCACAGTAC TAAATTTAAA TCTAGATTAC CGTACTATAT CACTAGTACA 
AATCATTGTA TTATATAACC TCAATCACAT ATACCCAGTC ATTTATCAAT 
CATTCAATCC CAAAACAATG AAAAAACAAA TTTGATACAG CTTAGTTACT 
TACTACTAGT AGCCAAAAGT AGTAGCTCGA GCACAATAAT TTATGAGAAA 
AGGAAAAGTA TTTCATCACT AAATATGCAT GTAGTTTATT TACTCTGGAA 
AGTTGTGAGA GCCCAGCCCA AGATAGTTTT GTAAGTAGAG TGATTGGGCC 
TAGCCCAGCC CAATAAAGTT TTGTAACTAT ATTAGGCAGA GAGAGTTGGA 
CCTAGAATAA TGTCTCAAAA TCCATCTGTT TGGATGCAGT GATATCTCCA 
TCCCCAATTG CCTAAACCCA AATTAGAAAT TTTGCAGAAA TCAAATTTTG 
TCGCTAAAAG CCCCACACAG TTCGATGGGA AGACTTTGGG AATCACTGCC 
CGTGATTCTT CTACTCTTAG TTCTTCTTCT TCATCAATCA GTCTCTCAGG 
TATTTGAAG

3 prime edge [+] show sequence

Chromosome: 5; Position: 23109444 [Map]; Strand: c
- AT5G57100.1 - [+] show detail - Nucleotide/sugar transporter family protein
  Distance: -649; Region: promoter
- AT5G57110.1 - [+] show detail - autoinhibited Ca2+ -ATPase, isoform 8
  Distance: 0; Region: exon35 (3UTR)
- AT5G57110.2 - [+] show detail - autoinhibited Ca2+ -ATPase, isoform 8
  Distance: 0; Region: exon35 (3UTR)

ATTATTATGG CCAACAACGC TTTGCCACTT GAATAACTAG GTCACACTGA 
GAGTAAAAAT TTTCCATTTT TTCGAATTTT GATTTCTTGG TTAAAATCTT 
TACCAGTAAT GATTCGAAAG GTAGTCGATC ATATTACAAA AAAAAAGACC 
AAAAAGAAAA CCAGTAATCC AAAGTTGCTC GACCAACAAA CCCCGAAAAA 
CTGTACTTGG GGGGTTGGGT TTCCGAAAAA TATCAATAAA TCCATCATAC 
CAAACCAAAC GTTTTTTTTT CTGTTAGTCC TAAAANAGTA TCAAACAAGC 
TCATCAGNGT CTGANANATA ATAAACTGGC CTCCAAATCA NAGNGAACCT 
GANAAAAAAA TAAAAGCAAA CTTGTTATTT TCAAATTTTC AAATTCATTT 
CAGTCCTGCA TAAAGCT

AT5G57100.1

Model type: Protein coding
Short Description: Nucleotide/sugar transporter family protein
Computational Description: Nucleotide/sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT5G55950.1); Has 2192 Blast hits to 2189 proteins in 223 species: Archae - 0; Bacteria - 8; Metazoa - 527; Fungi - 398; Plants - 1015; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G57110.1

Model type: Protein coding
Short Description: autoinhibited Ca2+ -ATPase, isoform 8
Curator Summary: Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.
Computational Description: "autoinhibited Ca2+ -ATPase, isoform 8" (ACA8); FUNCTIONS IN: protein self-association, calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: autoinhibited Ca(2+)-ATPase 10 (TAIR:AT4G29900.1); Has 45378 Blast hits to 34457 proteins in 3207 species: Archae - 868; Bacteria - 31014; Metazoa - 4020; Fungi - 2704; Plants - 2112; Viruses - 3; Other Eukaryotes - 4657 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G57110.2

Model type: Protein coding
Short Description: autoinhibited Ca2+ -ATPase, isoform 8
Curator Summary: Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.
Computational Description: "autoinhibited Ca2+ -ATPase, isoform 8" (ACA8); FUNCTIONS IN: protein self-association, calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: autoinhibited Ca(2+)-ATPase 10 (TAIR:AT4G29900.1); Has 45517 Blast hits to 34552 proteins in 3221 species: Archae - 872; Bacteria - 31142; Metazoa - 4022; Fungi - 2709; Plants - 2112; Viruses - 3; Other Eukaryotes - 4657 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G63270.1

Model type: Protein coding
Short Description: RPM1-interacting protein 4 (RIN4) family protein
Computational Description: RPM1-interacting protein 4 (RIN4) family protein; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT3G48450.1); Has 282 Blast hits to 281 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G63280.1

Model type: Protein coding
Short Description: C2H2-like zinc finger protein
Computational Description: C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G40710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR