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53-3402-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24135455 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3402-1 - 5-prime edge
    CTTGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCTC TTCGGCAAAC TCCACAGTTC AAATACCCAG
    GACCAAGATG CTGTGTGAAA GAAATGCGAT GATCATGACG ATTTATGTTC
    ATGACTTGAG GTAAGTCTAC ACAACTACAA TGGACCGCAA AACCACACCT
    GAAGACACAT ATAAGAGAGT ATAAGTCCTT TTACCCCACA AACGTTACAA
    GTGCAGTAGA CTCCTCTTGG AAAGAAAGTA AGAGGATGCT TGTGCGTCTT
    CACATTCTCG ACAACAAGAG GTGGTGGTGA TTTGATACAA CCAATGCACA
    GTGTGAAGTT GCAGATAGAA CAATGATAAA GAATACCATG CGGTTGTTGC
    CCACATAGAA AACAAGTCTT CTTATCATTA TCTGTAAGTG ATTCAGATTC
    GACGAGCATG AGAGGATGAT CAGAGTGACA AGGATGATTT ACCTCTTTCG
    AGAGATGGAT GCAGCCCACG TGGAAGTACA ACTCGCATCC AAGACATGAA
    TAGGATGATC CAATAATTCT ATTCTTGCAA ACTTCACAAG GGGTTTTCTC
    CTGTCTTTTC TTCAGGAAGA CAAGTGGATG GTCATGGCAG ATGGGATGTT
    CAATAGCTGG CGGTGGTGGG TTCATCCCAC AAGTCAAATC CACCTTGATT
    TTACATGTGG AACAACTATA AAAGTACTTC GCTGGCTTTG TTTCTC
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24135515 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3402-1 - 3-prime edge
    TATGCCAATT CAATGGAGCT TATTCTTGCT TAGTTTGCCC CAACTATGCA 
    GTTCATTCAC GGTGTGCAAC AAGATATGAC ATATGGGATG GTGTGGAACT
    GGAAGGGAAA GCTGAGAATA TTGAGGATAT TGCCGCCATT TAAGGTGGTT
    GGGGATGACT TGATTCGTCA TT

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR