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53-3408-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2789761 [Map]; Strand: w
      • AT5G08600.2 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
        Distance: 0; Region: intron11 (CDS)
      • AT5G08600.1 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
        Distance: 0; Region: exon11 (3UTR)
      • AT5G08610.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -534; Region: promoter
    Flanking Genome Sequence: 53-3408-1 - 5-prime edge 
    CTCGTAGCCA TCAGAAACAA AAACCCAAGA AAAAAGGTGG TAAGTAAAAC 
    CAATAGAGGT CAGAGCAAAG TAAAGGACCA ATGATTTTGC ATTCTCAAAC 
    TTATTTAGAC ACAAAACTTT GATCCCAACG GTACCATTTT TCTTTGTATT 
    TTTTGTCTTA TTTATAAAAG AAACATTTAA AAAGGTTTTA TTTCATAGCT 
    CTTCAAATCC TTGTTCATCA CCATTTCTTC CACTAAGAAA AATTGAAAAC 
    TTTTTGTCTC CGGGCTTTGG TATGGGCCAC TTAGGACTGC ACTAAGTATT 
    GAGCCTATAA GGCCTTTGTG TAACTCTGTT AATATTATCC AGCTTTAAAA 
    TTGAACACTC GACANAGGGT AATTCAGTAA TTATAAGGTT TTTCAAAACA 
    CTTGTCGTTT TGTTTACAAT TTACATTTTA AGCAATGGGA GCAAACTACA 
    TACCGTTTCT TATCCTT

AT5G08600.1

Model type
Protein coding
Short Description
U3 ribonucleoprotein (Utp) family protein
Computational Description
U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1); Has 7611 Blast hits to 5651 proteins in 499 species: Archae - 10; Bacteria - 906; Metazoa - 2522; Fungi - 1145; Plants - 309; Viruses - 73; Other Eukaryotes - 2646 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G08600.2

Model type
Protein coding
Short Description
U3 ribonucleoprotein (Utp) family protein
Computational Description
U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1).
Link
InterPro Scan - TAIR

AT5G08610.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G08620.1); Has 49840 Blast hits to 44437 proteins in 3094 species: Archae - 842; Bacteria - 25196; Metazoa - 7587; Fungi - 5309; Plants - 2787; Viruses - 50; Other Eukaryotes - 8069 (source: NCBI BLink).
Link
InterPro Scan - TAIR