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53-3408-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 112541 [Map]; Strand: c
      • AT4G00240.1 - [+] show detail - phospholipase D beta 2
        Distance: -1823; Region: intergenic
      • AT4G00250.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: 164; Region: intergenic
    Flanking Genome Sequence: 53-3408-2 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TAAATAAATA TACAATTTAC AAACATCATT TCAGAATCCA TTTTGTTTAA 
    TGAGGTTGAA CCTATCACCA TATAAGCTAT TTAGAACTCT TGTTGAATAT 
    GTTTGTGAAT CCATTCTATT GTGTGTTTCT TTGTTTTGTA ATAACTCTGG 
    TCATGAGTTT TGAGTAGAGA GACATTAAAA AAAGAAGCAC ATTTACAAAA 
    TCCTAAAAGT TCATTACAAC CATCGACCAA AAGGCTTGTT AGACAACTTA 
    TCTTAATCTT GTTATAGCTA ATTCTCACAC GAGAATCCAA AAGACTAAAA 
    ATCCATAAAC GTAGATAGAA AGATAAACCC TAAGATAGAT AACAAAAGAG 
    GGCATTACAT CCTTAGATTA ACCCTATACA ATCCCTAAGA TAGCTTCTTC 
    TTCTTCTTCT TCTTAGTTGG TTTGAGCAAG CACCGAAGTC ACATCCTTCA 
    AAACATNCAT CTCCGCCGCN NCGNCTCNCA TTTNTTANCG TCCACNNCCT 
    TNATCTNNTN TTGAATNCTN TTNTTANTCT NCNGAGACNC CTTGCCCCCC 
    TTNTTNTTNA NANAANACTC ATCCCNNCCN NNATTNNNGA TNNNAGGNAC 
    ANGAAAAGAC NCCNNNNCCC CTNNNNNT

AT4G00240.1

Model type
Protein coding
Short Description
phospholipase D beta 2
Curator Summary
member of C2-PLD subfamily
Computational Description
phospholipase D beta 2 (PLDBETA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: phospholipase D beta 1 (TAIR:AT2G42010.1); Has 2407 Blast hits to 1935 proteins in 427 species: Archae - 0; Bacteria - 522; Metazoa - 526; Fungi - 534; Plants - 642; Viruses - 3; Other Eukaryotes - 180 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00250.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00238.1); Has 626 Blast hits to 580 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 135; Fungi - 97; Plants - 294; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR