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53-3415-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24250988 [Map]; Strand: c
      • AT5G60230.1 - [+] show detail - splicing endonuclease 2
        Distance: 0; Region: intron1 (5UTR)
      • AT5G60230.2 - [+] show detail - splicing endonuclease 2
        Distance: 0; Region: exon1 (5UTR)
      • AT5G60240.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -394; Region: promoter
    Flanking Genome Sequence: 53-3415-1 - 5-prime edge 
    GTGGCAATGT TTATCTGATT TCCTAGATTA TAAGAGTTGT AGTTGGTAAT 
    AGACTAAGAA AAGCTTTTAC ATCTTTTGGT CAAAAGGTTT GATTTTTAGT 
    GCTATATATG CAGCTCAATT CCATGGCGCC TAGATGGAAA TGGAAAGGAG 
    CNTGAAGCAA AAGCTCTTGC AGAACCTATT TCAAAATCAG TCTCAGAGCT 
    CCAGCTCTCT CTAGCCGAAA CAGAGTCCTC GGGAACCCTC TCAAGTTGCA 
    ATGTGCTTCT AGCGGTTGAG CCAGAGCAAG CTGAGCTTCT TGACCGTTGT 
    TGTTTTGGCA GACTCGTTCT ATCGGCAGAG AAAATCAAGA AATGGATTCA 
    GTTATCTTTT GAAGAAGCTT TNTTTTTGCA TTACAATCTC AAATGCATCA 
    AAATCTCACT TCAAGGTCGT TGCTTGGAGA ATGAAGTAGA CACATGGCTC 
    TACATGAAAT CAAAAAGACC AAACTTTCCA ATGTTTTTCA AAGCTTATTC 
    ACATTTACGA TCGAAGAACT GGGTTTTGAG ATCAGGGTTG CAATACGGTG 
    TG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24251104 [Map]; Strand: c
      • AT5G60230.1 - [+] show detail - splicing endonuclease 2
        Distance: 0; Region: intron1 (5UTR)
      • AT5G60230.2 - [+] show detail - splicing endonuclease 2
        Distance: 0; Region: exon1 (5UTR)
      • AT5G60240.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -278; Region: promoter
    Flanking Genome Sequence: 53-3415-1 - 3-prime edge 
    ATTGCCACTA CGACATAGTT GTTAACGTTT AAGGTATCTT GAAGAACCAA 
    GTAGGAATTG GAATGAGCAA AACCAAGAGC TTTTGATTCT TTTCCCACTT 
    TTGTATTCAA AAATCAATCG TCTATGAAGC NGGAAACNTG TGACATTCAA 
    ATTCACAACA AAGGTATTTT GAAATAGTAA ACACATTTTA ATTGAAGAAG 
    CAATCACATT CAGACTTGTC CTCACATGAC AGTAACCATG AAGAGAAGAG 
    ATTTGGTTAA AAACGAAACC TGGCGTATTG ATTTATGAAG ACAAAACAGA 
    GGATATGAAG GACTCGGGAA GCAGGGTCAA CAATGGAGAG AGCTATGCTT 
    CGAGGATCCA ATGGAGAGCT ATGCGGTAGT GAAAAACGTA ATCTCGTAAA 
    AATTATTGTT GATTTCGATT GCACAGTGAA AATAGAAAAG AAATAGCCAC 
    GAAGATTCTT CGAAATCGAG AGGAAGAGAT CGAGAATTGA AACGAGATTC 
    GGATCTCTCT CTCCCTGGGG AAGACAGTCG CGCGACTCGA GCAGCAGAGA 
    TTGTGGTGCC TACTGAGTAC CTCGTGTGAA G

AT5G60230.1

Model type
Protein coding
Short Description
splicing endonuclease 2
Curator Summary
putative subunit of tRNA splicing endonuclease
Computational Description
splicing endonuclease 2 (SEN2); CONTAINS InterPro DOMAIN/s: tRNA-intron endonuclease (InterPro:IPR006676), tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), tRNA intron endonuclease, N-terminal (InterPro:IPR006678), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856); BEST Arabidopsis thaliana protein match is: splicing endonuclease 1 (TAIR:AT3G45590.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60230.2

Model type
Protein coding
Short Description
splicing endonuclease 2
Curator Summary
putative subunit of tRNA splicing endonuclease
Computational Description
splicing endonuclease 2 (SEN2); CONTAINS InterPro DOMAIN/s: tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), tRNA-intron endonuclease (InterPro:IPR006676), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856), tRNA intron endonuclease, N-terminal (InterPro:IPR006678); BEST Arabidopsis thaliana protein match is: splicing endonuclease 1 (TAIR:AT3G45590.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60240.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR