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Mutant Lines
53-3417-1

53-3417-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 18149869 [Map]; Strand: w
  - AT5G44940.1 - [+] show detail - F-box/RNI-like superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 53-3417-1 - 5-prime edge
```
GAGGCAACGG AGGCCATTTC CCGAACTTGG GGTGGTGAAT GTATTTAGGA 
GGAANAACTG GANAATATTT GTCACGGTGA GGATGGTCCT TTGGTCGTGG 
AGAAGCTCAT CTCAGGATGT CC
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 18096979 [Map]; Strand: w
- AT4G38760.1 - [+] show detail - Protein of unknown function (DUF3414)
  Distance: -813; Region: promoter
- AT4G38770.1 - [+] show detail - proline-rich protein 4
  Distance: 0; Region: exon2 (3UTR)

CCTAGTTGCC TCCACACCCT TGAGAAACAT TAAATACGTA TATATATAGA 
TATACGTATA CTCATGTATA ATCAACGTGT TACCTTTTTT AAAATATTTT 
ATCTTTGCAT ATGTTTTATA TTTTGTTTCA TTTGTTGGCT TTGAGTTGTC 
TATGTGTAGA CTGTTTGTTT ATATTCCCGC AATCTTCCAA CAATAATATG 
GTAATGATAC GTTTCTCTTT TATCACGAGA TGATCAACAA GCTTCTGTTT 
TCGCGCGCAG AAACGTTTTT GACCATATTT TTGTCACTAA GCGACAACAT 
ATGGGAGATT AATAT

AT4G38760.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF3414)
Computational Description: Protein of unknown function (DUF3414); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3414 (InterPro:IPR021827); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10845.1); Has 113 Blast hits to 108 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38770.1

Model type: Protein coding
Short Description: proline-rich protein 4
Curator Summary: Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall. Transcripts are most abundant in aerial organs of the plant.
Computational Description: proline-rich protein 4 (PRP4); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 2 (TAIR:AT2G21140.1); Has 142477 Blast hits to 44863 proteins in 2266 species: Archae - 463; Bacteria - 33947; Metazoa - 50713; Fungi - 14839; Plants - 19672; Viruses - 4087; Other Eukaryotes - 18756 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G44940.1

Model type: Protein coding
Short Description: F-box/RNI-like superfamily protein
Computational Description: F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G44960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR