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53-3430-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1398311 [Map]; Strand: c
      • AT1G04930.2 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G04930.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G04945.3 - [+] show detail - HIT-type Zinc finger family protein
        Distance: -863; Region: promoter
      • AT1G04940.1 - [+] show detail - translocon at the inner envelope membrane of chloroplasts 20
        Distance: -871; Region: promoter
    Flanking Genome Sequence: 53-3430-1 - 5-prime edge 
    CTTAGATTCT AGCTAAGTAG TGGAAAGATT AGTGGGGAAA ATGCTCGAGA 
    TGATCCAAAG TTTCTTGATT GGAGTCTTAG TAGAACTGAA TCTGACTGTA 
    CCGTGACTTA AGAATCATCT TGGTTAATAT TGGATCCATT TTCGTCAGAG 
    TGATTCTCAT TCGAACTAAT GCATGTAGTT CTAGAATTTT GATCGACTAG 
    TCTAGTTATA CAACAATGTG AGTTGTTGGA CGTGTCTTTC ATGGTTTTCT 
    TATAAACCAT GTGATAGTTA GTAATTGGAT CTAGTTATCT TTCTATTTTG 
    GTTCTTTGTC CTGCTATGTG CCTGCTTTAC TCTGGTCTTG AAAATTCTCT 
    TTTGTGGAAT GAGGAAGACT TGAAAATGCT TTTATATCTT AGCAAATGTT 
    AAGCTGTTCT GCTCTTAATA GTTGGTTTGC ACCTACTTAC TTTTGATTAT 
    TGCTCTTGCT CCAGTCACAT TTTCTCATTT TCGTAAATTT TGGTACTTAG 
    GTTGCCCCGC CCCCAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1398427 [Map]; Strand: c
      • AT1G04930.2 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G04930.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G04945.3 - [+] show detail - HIT-type Zinc finger family protein
        Distance: -747; Region: promoter
      • AT1G04940.1 - [+] show detail - translocon at the inner envelope membrane of chloroplasts 20
        Distance: -755; Region: promoter
    Flanking Genome Sequence: 53-3430-1 - 3-prime edge 
    AATCTAAGCA TTAACAAATG AAACATGACA AGCAGAAATT GAGGACTTCA 
    TCTAAGAAAC CTCACCCGCG GTTGCAGAAA TTGAGGACTT GCTCTAATGG 
    GACCCAACCC AACAGGAGAA CCCAATCCAA GGCGTGGTAA TGGACGAATC 
    TGAGGATTTC TCTCCCTTAT AAACTGCTGC AACAAGGATT CCATTTGACG 
    CTGCTCATAT GGTCCAGGAT CGTAAGTAAA ACTCGGGCGA GGAGGGTACC 
    CACTCAGATT ACCAGCCGTC ACGGAAGGAT CTGCGACGAA TCCTCGAACA 
    GGTCGGGCTG AAAACCCTCG ACCCGGTAGA GCAAACGGGT AAAGAACAGC 
    TGACGGATCT TGAATTTGGC GTCTGACCGG AATCGAATGT GCGTAGAGGT 
    TATTACTATA AGCAGATTGT TGTTGGAACG GATTAGGGTG GCGAAGCGGA 
    GCTATGGGTC TGTAAGTCGG CGGCGGTAGT GGCGGCGGAG CAGGAGGTGG 
    CT

AT1G04930.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1); Has 1624 Blast hits to 1330 proteins in 201 species: Archae - 0; Bacteria - 140; Metazoa - 517; Fungi - 162; Plants - 364; Viruses - 182; Other Eukaryotes - 259 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04930.2

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1).
Link
InterPro Scan - TAIR

AT1G04940.1

Model type
Protein coding
Short Description
translocon at the inner envelope membrane of chloroplasts 20
Curator Summary
Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation.
Computational Description
translocon at the inner envelope membrane of chloroplasts 20 (TIC20); CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: HIT-type Zinc finger family protein (TAIR:AT1G04945.3); Has 279 Blast hits to 278 proteins in 76 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04945.3

Model type
Protein coding
Short Description
HIT-type Zinc finger family protein
Computational Description
HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Zinc finger, HIT-type (InterPro:IPR007529); BEST Arabidopsis thaliana protein match is: translocon at the inner envelope membrane of chloroplasts 20 (TAIR:AT1G04940.1).
Link
InterPro Scan - TAIR