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53-3433-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 320490 [Map]; Strand: c
      • AT5G01830.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -205; Region: promoter
    Flanking Genome Sequence: 53-3433-1 - 5-prime edge 
    CTTTGGATTT TCTTCCATAA CTACAGTTTT TTAGAATAAC ACACGCCTAC 
    ACGCCTCGTG AGTTGTCGAG CAACACTGAT TACAATATAT AAGAAATGTA 
    AGAATGAAGA TAAGGTCTTC GTTTTGGTGA CATAAGAATG CAACAGTTGG 
    TACAAGTTTG TTAGAGAGAA TTGATCTCGT CTTCTCTTTT TCAATATATT 
    TAAATTATAT ATACTCACAT AACTAATCAT TCTAATTTTT TCATAATTTA 
    TAATTGAATC TGCTCTGCTG GCTCTCTCCA CTTTCCGGTG AATTATTGAA 
    TACTAGTAGT ATTTCTCAAA TTATATAACA AAATGTTTCC ATTACCAAAG 
    TTAGCTTTCC TTTTATTTTA AACGAGTAGT TTCCCTTTAA AGCAAATTAT 
    GAGATGTTTG CATTTTTAAA ATTTTACACA AAAAAATTAT TGNNNTTTTT 
    TTCCTTTTTT NCTGGGGGGG GGGGNCACCC AANAAAAAAA NCCCCTTANC 
    AANTNAAAAT TCTTCCCCCC CTTNNAAGGG CCANTTNAAT NNAAGGGNTT 
    TGGGGTTTNT NTTAAAATNG TGGAAAATGG AAAAACATTA AAATGTNCCT 
    TATTTGNATG GCANNGGCCC CNCTCNTACC CANNGCCTTA TTGNNCANAC 
    TTAAAAAATG GGATNAATTT TGGGAAAAAN GGCNACAAAN TTCCAANT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 320622 [Map]; Strand: c
      • AT5G01830.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -73; Region: promoter
    Flanking Genome Sequence: 53-3433-1 - 3-prime edge 
    GGATAAAACT GGTTTTAGAT TAAAACTAAG CTAAGTTATG GCCTATGGGT 
    TAGTTGTGAA ATAAAAATTG GGTTTGGTCT AATTTCGGCC AAAAAAACAT 
    TACCATAAGA GAAAAAGTCA AAAGAGAAGG GAATGTTTGA CCTCTCGCCT 
    CTCGTGCTCC TCTGTAAGGC GGCTTTGTCC TCTCTGCGAC TGACTGACTT 
    CTTCTGACGG CTCCGTCCAC CGTCGTCTCT TCTTCCGTTA CGACTTTTTC 
    TTCCAATTAA ATAACTTTAA CCAAAGGAAA ATTTGAAACG CCAGCTCCTC 
    TCTCCGTGTA ACAAACCAAC AACTACAACC AACAAGAGCT TAAAGCTCTC 
    TTTCTTTCTT TCTTCTTCCT TTTCTCTTTT CCATTCCTAA ACAAAAGTCT 
    TTCTTCCTCA TCAATGGCTG TTACTCTTGA TTCTCCTTCT CCGGCGAGAA 
    AACGTCGCCC TTTG

AT5G01830.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 17 (TAIR:AT1G29340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR