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53-3438-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10547020 [Map]; Strand: w
      • AT5G28540.1 - [+] show detail - heat shock protein 70 (Hsp 70) family protein
        Distance: -3645; Region: intergenic
      • AT5G28545.1 - [+] show detail - transposable element gene
        Distance: 726; Region: intergenic
    Flanking Genome Sequence: 53-3438-1 - 5-prime edge
    CGGTCGGGTC TTACAATTCC TATTATTATA TAAAGGTTAA CTCTTCTTTT 
    GGGAAAAGAC AGATTATGTC TTTGTAACAA CAATTATTTT TTTATAAAAA
    GGAAAGGAAA TTGCATCAAA GTTTAAACTT TAATTTAAAA CTGTTTGATA
    AGAGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10546904 [Map]; Strand: w
      • AT5G28540.1 - [+] show detail - heat shock protein 70 (Hsp 70) family protein
        Distance: -3529; Region: intergenic
      • AT5G28545.1 - [+] show detail - transposable element gene
        Distance: 842; Region: intergenic
    Flanking Genome Sequence: 53-3438-1 - 3-prime edge
    CCCGACCGTC TTTACTAGTG GACCCCACAT TCTCTCTCGG GTCCATGGGC 
    CCACCTCTGT CCGACGGTCG GTGGGCCACG TCCGGGAGGC TTTAAAGACT
    TGTTACCATC CCTAGAAATC ACCACATGAT CTTTTCCCAT GCTTTGTCCT
    CTCTCGAATG GTTCCGACAA TCACTTTCCG AAATGCCACC CATCCTGAAA
    CTACTTCAGC CCAAACACTT TTAACTGTAG AGTTCTCTCA AGACCTTTAA
    CCGAAAAGAT AAGTGCACTT TGGTGGCATA GGTGGCCAAA TCAATTCTTT
    TAAACCTCTT TGCATGCACC ATCATATTCC TAAAATTAGG GTGTTACAGA
    AATATTATTA CTTGAATTTT ACAATTATTA TCATCAATCG AATTATTTCA
    ACATTAGAAA AATACATAAT TGATAAATAT AAAAAAATAA AATAAGAAAC
    ACCCACACAA TCATCCAACT ATATTCAGTT AATATTTTAT AAGTTTAATA
    TTTTTTTAAA AACCTAAATA TAACTTATAA ACAAAAGAAA ACTTACATAA
    CAAAACACAA AAAAAAAACT CAAACAAGTT GGAACCATAT NTTTCATGGC
    AAGCCAAAAA CTATTGAGTA AATATCTGGA TTTTTGGGTA AAATTCAAAA
    TACANATTCG GGTTTGGATT CNATTTTTTT CGGTANAAAA ATTTAANATT
    CAATAAAATA ATTTCTA

AT5G28540.1

Model type
Protein coding
Short Description
heat shock protein 70 (Hsp 70) family protein
Curator Summary
Encodes the luminal binding protein BiP, an ER-localized member of the HSP70 family. BiP is composed of an N-terminal ATP binding domain and a C-terminal domain that binds to hydrophobic patches on improperly/incompletely folded proteins in an ATP-dependent manner. Involved in polar nuclei fusion during proliferation of endosperm nuclei.
Computational Description
BIP1; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, ER-associated protein catabolic process, response to heat, polar nucleus fusion; LOCATED IN: cell wall, plasma membrane, chloroplast, vacuole, endoplasmic reticulum lumen; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G42020.1); Has 36391 Blast hits to 35786 proteins in 4820 species: Archae - 162; Bacteria - 17493; Metazoa - 3988; Fungi - 1814; Plants - 1283; Viruses - 341; Other Eukaryotes - 11310 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28545.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 2.7e-08 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR