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53-3440-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24172988 [Map]; Strand: w
      • AT5G60030.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -13; Region: promoter
      • AT5G60040.2 - [+] show detail - nuclear RNA polymerase C1
        Distance: -271; Region: promoter
      • AT5G60040.1 - [+] show detail - nuclear RNA polymerase C1
        Distance: -415; Region: promoter
    Flanking Genome Sequence: 53-3440-1 - 5-prime edge 
    TGAAAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCGCG CCTCTCTAAC TACACAAATT AGGGCAATTT 
    CCCCTAAAAG CTGACAACTT TCGAAATAAG TAGAAAACAC AACTACGAAA 
    GTACCCCTTG CTTGTTTTTT TTTTTNTNNN ANGGNANCNT NTNNNAAANG 
    GGCCANCAAN NCCCAAAANT AAAAAANCCC CCAANCNNAC AAANAAANCC 
    CTNCCNNGTT TNCNTTTNGT TTTNAAGGGA TTTNAAATNT AAAAAANCNC 
    GNNANATTNT NGTTNTNTAA AANNTNTGGG GGNAAAGGGT TTTACNTAAN 
    CCANCCNANG GNNNCAANTT CAATNNCNAN GGNTNGGNTT TTGGNTTTTT 
    TTTTTTGGTT TTGGCCCNNC CNTGGNANAA NCCNTTTTTN TNNCCCNCCN 
    GTANCTNANC TTNGGGGTTT TTTTTNAANC CNNAAACCCN CNTTNTTTAN 
    CNGGGGTTTT TTTANCCGAA NGNGNNTTTT TNAANGGGCC CNAATTTANC 
    GGGGTTTTTT TGGTTTNTTT NNCCCCNNTT AAAAANTNAA GNNGTTTTTT 
    TTTTTGGGGG AANTTTTTTT NGANCNTTTN TTTNGNAAAN GGGGNNNNAA 
    AANGGNANTT TTTTTNCCCN CCCGGGNCNG GAANCGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24172933 [Map]; Strand: w
      • AT5G60030.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT5G60040.2 - [+] show detail - nuclear RNA polymerase C1
        Distance: -326; Region: promoter
      • AT5G60040.1 - [+] show detail - nuclear RNA polymerase C1
        Distance: -470; Region: promoter
    Flanking Genome Sequence: 53-3440-1 - 3-prime edge 
    GCGACGACCT TTCGAGCTTC TTCCGATGAA GACTGTCACC GGAAGAGTTG 
    TTAGTGCTGA ACCAATCTCC CTCTCAAAGG CGGCTAAGCT NCCATGNCGG 
    GCCGTNAGAC CACGCTNNCC CTATAGCNTT TGTGTCTTNT AACAAGGATA 
    CAATGATTAC NNTNNTANNA NCCGGTTGCG GNGNANGTTC TTATACTCAT 
    TTATACACAT GACNTGANGT GATANNNNAC TCCANANCAC TAACCANGCN 
    TNCTTAANTN GNTGGCAATT ATACGCCAAA ATGAGAGGCG TAGAGTGGAA 
    CACATTTCGC TTTCTATCTG ATGATGGCTC AAGAATT

AT5G60030.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60040.1

Model type
Protein coding
Short Description
nuclear RNA polymerase C1
Curator Summary
Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
Computational Description
nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1); Has 28475 Blast hits to 24538 proteins in 8142 species: Archae - 517; Bacteria - 7526; Metazoa - 2258; Fungi - 3135; Plants - 6544; Viruses - 257; Other Eukaryotes - 8238 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60040.2

Model type
Protein coding
Short Description
nuclear RNA polymerase C1
Curator Summary
Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
Computational Description
nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1).
Link
InterPro Scan - TAIR