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53-3449-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952587 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1985; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4595; Region: intergenic
    Flanking Genome Sequence: 53-3449-2 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTC CAGAACCGTT AGATCCACTT ATCATATGAA 
    CTTTTCAAAA AAATGTTTCG AAGTTTGAAA TTTATATTAT GTTATGTATA 
    TATACATCCA TTTTTTTATC AACTTATATA CATCAGTCCT TTTGCCACNT 
    TTAGCTAAAG TTAGCCAATT AAGCGGTAAG AAATCACTGA TAAATTCTTA 
    ACATGAATTA GATACCAAAT TTTAACTAAT TTGTTGGATT AATCATAAGC 
    TTNCATGGTG TAGCCAAAGT CCATATGAGT CNTTGGCTTN GNGTCTNCTA 
    ACAAGGATAC CATTCTTACG CCTTTAAGAT CCAGNGGCGG TNNAAGNTCT 
    TATACTCAAT CATACAAATG ACATCAAGTC ATATNCGACT CCGAAACACT 
    AACCAACCTT CTTCTTGCTT CTCAAAGCTT TCATGGNTNN AGCCAAAGTC 
    CATATGAGTC TTTGGCTTTG TGTCTTCTAA CAAGGAAACA CTACTTATGC 
    TTTTAAGATC GAGTTGCGGT TTAAGTTCTT ATACTCAATC ATACACATGA 
    CATCAAGTCA TATTCGACTN CNAAACACTA ACCAACCTTN TTNTTGCTTC 
    TCAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19432950 [Map]; Strand: w
      • AT2G47340.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G47350.1 - [+] show detail - HIT zinc finger ;PAPA-1-like conserved region
        Distance: -841; Region: promoter
      • AT2G47350.2 - [+] show detail - HIT zinc finger ;PAPA-1-like conserved region
        Distance: -841; Region: promoter
    Flanking Genome Sequence: 53-3449-2 - 3-prime edge 
    GCTTTTGAGA CATGGCCAAA ACGTTGCTAC AAAGCTTCTT CATAAGATCA 
    TCAAGAGACG CCGTCGGCGA ATCAACATCA GGAATATCCA CGAAATTATC 
    AGAACAAGTC GACACATCGG AGATGGCTGC ACTCAATACC GAATCCAATC 
    TCCCGTAATC TCCCTCCTCC ATGGCCATCT TCGCATCTTC AAGACCTGAG 
    ATCAACGAAT CGTAATTCTC GACGCAAACA CTCATCGCCT CTTTCACCGG 
    CATCGGCGTT TTCCTATCTT CCACCACACG TTTCGCGTAA TCCAAAGTCG 
    CGTTCGCTTT TTTTAACAGA GATTCAGCTT CCATTCGCAT CACATCCTTA 
    GGAGCAATTC CTCCGTCTCC TTCTTCTCCT TC

AT2G47340.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G02550.1); Has 153 Blast hits to 151 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 4; Plants - 145; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47350.1

Model type
Protein coding
Short Description
HIT zinc finger ;PAPA-1-like conserved region
Computational Description
HIT zinc finger ;PAPA-1-like conserved region; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1); Has 3160 Blast hits to 2461 proteins in 330 species: Archae - 7; Bacteria - 184; Metazoa - 1235; Fungi - 390; Plants - 202; Viruses - 26; Other Eukaryotes - 1116 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47350.2

Model type
Protein coding
Short Description
HIT zinc finger ;PAPA-1-like conserved region
Computational Description
HIT zinc finger ;PAPA-1-like conserved region; CONTAINS InterPro DOMAIN/s: PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR