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53-3450-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 225410 [Map]; Strand: c
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3450-1 - 5-prime edge
    GGTTTATATC TAGAGATTTA AATACCCATC TCCTTCGGTT CTGAATATTT 
    CTTTAAAAAT GGTTAAGAGG ATATAAAGTT TTGGTTTGTA TCAAAATTGA
    TGAAATTTGA TGGAACGTTC CTTAAAACTT AAAAGTGGAT ATACATGCTA
    ATTTCGGAGA TATATGTAAG ATGACGTGAC AATTGCAGGT GGTCATCGAG
    TTGATCAGAC AAAGCTCTGC CCATCTTTTC CACACACAAA CCGACCACAG
    CCACAGGTAT TTTCTTTGAA TTATGTTTAC GTGTAATAGT TATATGTAAA
    AAGATACTCA CAAATCATGC ATGCATAAAT AAATAGGTGA CCAAAACAAT
    ACATAGATGT ATATATAAGT GTAAATAACT AAATATGTGT GGAAAGTTGG
    GGAGACAAGT AAATAGGGTG CAGAATAGAG TTATAGAGAA GCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 225527 [Map]; Strand: c
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3450-1 - 3-prime edge
    TAAAACCGAA CTAAATATTT ATCGTACCTG ATGATGAATC CTTGACGTCT 
    TTATGTGGTT TGATAATAGC ACCACCTTCA CGACGGCGGC GTTTTAGTCT
    CTCTCTAGCC TTATGATTCT GAAACCAATA GAAAACGTTC TTCCCTTCGA
    TTCTCCCATA TTTACGAAGC TTAGATGCTA TCTGTTGGAT CTGTTCCGTC
    GTCGGCGTCC GTGTTCCGCT TCTGTAAAGC TCTTCTAGCG TCGTGATCTG
    CTCTGGCGTC GGATTCCATC TCAAAGTCGC CGCCGCAGGA ATGTTGTTTT
    TCCGTTCA

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR