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53-3451-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19126185 [Map]; Strand: c
      • AT3G51560.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -272; Region: promoter
      • AT3G51570.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -173; Region: promoter
    Flanking Genome Sequence: 53-3451-1 - 5-prime edge 
    ACCTGTTCTA CTCATCTACA AAACAAAAAG AATTGCTACG AATTAAACAA 
    ACTATAAAAC TTAACTATCA TTCTGGTTTT ATTTAAGTTC AAGTTGAGGT 
    GTTGTGACAA AGAGAATAAG CGAAACTTCC GAGAAGAACT TTGGCCGGCC 
    TCGATCAAAT AACACAATTC CAAGAAATTT GTAAGAAAAA CTAGGTCAAC 
    ACTCTACTCG GAACGACTTC TTCATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19288161 [Map]; Strand: c
      • AT3G51980.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -609; Region: promoter
      • AT3G51990.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3451-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTGG 
    AGGTTTCGAC ATCAACAATC TCCTCGGACG TGGAAGCCAT GGAAGCGTTT 
    ACAAAGCTGT CATCGGTTCA CAGTCACATC GCGGTCAAGA GACCTTCGAA 
    ATCTCGAGAA ATCAGCCGTG AGTTCCACAA CGAATT

AT3G51560.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G19520.1); Has 29226 Blast hits to 20052 proteins in 857 species: Archae - 16; Bacteria - 1964; Metazoa - 4192; Fungi - 293; Plants - 21872; Viruses - 18; Other Eukaryotes - 871 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G51570.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45250.1); Has 19036 Blast hits to 14178 proteins in 545 species: Archae - 8; Bacteria - 1068; Metazoa - 1899; Fungi - 85; Plants - 15364; Viruses - 2; Other Eukaryotes - 610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G51980.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleotide exchange factor Fes1 (InterPro:IPR013918), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Fes1C (TAIR:AT5G02150.1); Has 632 Blast hits to 632 proteins in 203 species: Archae - 0; Bacteria - 3; Metazoa - 254; Fungi - 162; Plants - 146; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G51990.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G28390.2); Has 110531 Blast hits to 109509 proteins in 4468 species: Archae - 125; Bacteria - 12250; Metazoa - 41494; Fungi - 9129; Plants - 31227; Viruses - 433; Other Eukaryotes - 15873 (source: NCBI BLink).
Link
InterPro Scan - TAIR