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53-3476-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12735302 [Map]; Strand: c
      • AT1G34740.1 - [+] show detail - transposable element gene
        Distance: -7113; Region: intergenic
      • AT1G34750.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 790; Region: intergenic
    Flanking Genome Sequence: 53-3476-1 - 5-prime edge 
    ATATTATGTG CATATAACAC GATCTAACAA AAGGAAGTAT TGAAATTATC 
    AACAGTATCA TTTCTTCTTG TAAAAATCGA TTTTATATTG AGAATTTTGA 
    GTTATTATGA GAATTGGCCT GGGAAACAAT ACATCNTGAG TCTAATTAGT 
    TTTTCAATAT TTCATTCTAA AACAGAGAAA ATATTAGTCC CTCTTTTTGC 
    CAAAAATAAC CTTATGCGTT TTTTCATTTT TTCATTTAAA CACGATAAAT 
    TTAATATATG AACCATCAAT ATGTTGTCCA TGGATGTCCA AAAAACTTTA 
    CAAACCTATG TATATATCTT AAACGGATCA TCTTCTTTGT GTGTCGCCAT 
    CGTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12735418 [Map]; Strand: c
      • AT1G34740.1 - [+] show detail - transposable element gene
        Distance: -7229; Region: intergenic
      • AT1G34750.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 674; Region: intergenic
    Flanking Genome Sequence: 53-3476-1 - 3-prime edge 
    CATAATATGT CTATTAGGGA GTACTTTTTT CAAACTTTGT ACCACTGCCT 
    TCTCTTTCTG AACCCATATG TTGTCGATTA GAGAATTTTG TACCATAGTC 
    TATGAAGATG ATTGATAACT CTATCTTTAT CAACACAAAA TATCATATAC 
    GAAATATATG TTACNTTCGA TTTAATGCAA AATAAAATTG AACAACATAT 
    AGAGACGATC GTAAATTAAA TGTTGATATT ATCTTGTTTT TCTATCAAAA 
    CACATAAGTT TAATTTATTA ACTTAGTTAT TTTAATACTT TTTACATTTT 
    GACCCTTAGC TTAATAAATT TAATTTGATG TCTATAATAC GATACACTTT 
    AAAAGATTCA AGTATTTAGA GAACTGAGTC ATATATCGGT AACATTGGTT 
    GAGACCATTG TCATAAAGGA GATGGAGGGT TCGGACAGTT CTTTTGAAAG 
    TGATTTTTTT TTGAGGATTT AAACGGAATT GATGAAATGG TTCCTTAAGT 
    TTTATTGGGA GGAATGG

AT1G34740.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42730.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075)
Link
InterPro Scan - TAIR

AT1G34750.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: phytochrome-associated protein phosphatase type 2C (TAIR:AT1G22280.1); Has 7616 Blast hits to 7609 proteins in 922 species: Archae - 14; Bacteria - 1457; Metazoa - 1483; Fungi - 777; Plants - 2623; Viruses - 11; Other Eukaryotes - 1251 (source: NCBI BLink).
Link
InterPro Scan - TAIR