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53-3483-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11527786 [Map]; Strand: w
      • AT1G32049.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G32050.1 - [+] show detail - SCAMP family protein
        Distance: -659; Region: promoter
    Flanking Genome Sequence: 53-3483-1 - 5-prime edge
    ACCAACAATA TAGCCATGTC TTCCTCCGGT AGTCCGGTAC ACAGTACCCT 
    AATTTCTAAC TCCGGCGATG AAAACACTGA TCATTCCTCC GCAGTACACA
    AGCTTATCGC TGTTATCAAC GGCGGAGCCA TCGGTTTGCT GCAGATCACA
    GAGAATTCCT CAGCTTCAAT CAATACTGCA GATCGTCAAG CCACTATCCT
    CTCTTTCTGT GTCTTTATTC TTATAC

AT1G32049.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT1G32050.1

Model type
Protein coding
Short Description
SCAMP family protein
Computational Description
SCAMP family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1); Has 679 Blast hits to 677 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 14; Plants - 225; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Link
InterPro Scan - TAIR