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Mutant Lines
53-3484-1

53-3484-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 30042263 [Map]; Strand: c
- AT1G79850.1 - [+] show detail - ribosomal protein S17
  Distance: -311; Region: promoter
- AT1G79860.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 12
  Distance: 0; Region: exon5 (CDS)

CATGGGATGG GACTTCGATC AGGCCGCGAA CGCCGAATTG GAGTCGAAGA 
AGGATCTACC GGATGATCCG TTGATAAAGG AGAAGCTAAG CGTCGTCACG 
ACCAAGAAGA CCTCATACCT CGAAACCCTA GGCGGTGTCA AGAGTCCAAC 
GGCACGGCAT TGATATTTGT GTGGAAAATT AGGCGCAAAA AAGAGCGAAG 
ACAGATTTAT TGATTATTTA ATTATTTTTA GGATTCAAAA ACTTTACAAA 
AGGGCTTTTG TAAATTCCTT TTTATAAAAA TGTGGGCTTT TAAGATTAGG 
CCCATTGTAT TGTAAAACCC ATTTACCATC TGTATACTGT ATACATCCCT 
TCTAAATAGT AGTAGTACTC ACCTTATCT

3 prime edge [+] show sequence

Chromosome: 1; Position: 30042379 [Map]; Strand: c
- AT1G79850.1 - [+] show detail - ribosomal protein S17
  Distance: -427; Region: promoter
- AT1G79860.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 12
  Distance: 0; Region: exon5 (CDS)

ATCCCATGAA ATCCGACAGC GTCATGCTCC CAACCAGCGT CTCTTCCTCT 
GCTTCCATCG GCGTGTTCCT CTTGTTCCCC GCTCGATCTG CCTCTAAAAC 
GTCATCGATT CTGGAAAGTA CCGTGTAGGC CAAGCTTTCC AGTATTCTCG 
AGTAGCTCTC CAGCACCGCC TGGCCCACGT CCTCGTTGAA CTGGATTTTG 
CTGATGTCGA GTGAAGATTG AGAAATGCCG GGGTATCTTT GCTTGAGAAT 
GAGCAAAATG GTCTCAGCTC GCTCTTCGAA GACCTCTCGC TTCTCCAGAC 
TTACTCCGGA GGCCCAGGGT GCCGATGATT TGTTGTCTTT ATAAACCATT 
TTGCGTTTCC ATATAATGAT TGATGCCTCG ATTCTGTTTT TGAGGTCCAC 
GATCTTGTGC TCCGACGACA TGTCCATGCT GCTCAGGAAC TGGTCCGGGT 
CAAAGAAGTC CACCGTTATA TTCTTGTACA TCTGATCCCC GAGACTCGCC 
CTCCCGTTCT GTTTATTTAT TTATTACAAA CTAAACAAGT GAGTATTA

AT1G79850.1

Model type: Protein coding
Short Description: ribosomal protein S17
Curator Summary: nuclear-encoded 30S chloroplast ribosomal protein S17
Computational Description: ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G79860.1

Model type: Protein coding
Short Description: RHO guanyl-nucleotide exchange factor 12
Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth.
Computational Description: RHO guanyl-nucleotide exchange factor 12 (ROPGEF12); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1); Has 305 Blast hits to 303 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR