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53-3495-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 226499 [Map]; Strand: w
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -307; Region: promoter
    Flanking Genome Sequence: 53-3495-1 - 5-prime edge
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAA CTTTTGCATT CTTCTTATCA AACAACTCTC
    TCAGAAAATT TTATTACCAA ACAAAAAAAA AAANTNNNNN AGGNNNNANC
    CNGGNNNGGG TTNANGNAAA ANCCCNCCCN GGGCCCTNNC CGGGGNGGNG
    CGTGGGGTAN NANNCCCCNN NTNTNGCCCN GGGNTTNNGG CCNTTTTTNA
    CNAAANNCCN NANCGGNCCC NANNAANCCC CNGGGGGNNN NGTTTTTNCN
    TTTCCCNNTT TAAANGGGGN TTAAANTGGG CCNANNNAAN NNAACNGGCC
    CNANGNACNN NTTTGGNNCC CNNTNTNNNN NGTTNNAAAN NNGAANNAAA
    AAAAAAAANN TNCTTNCGGT TNGGTTTTGN ATTTTANGGT TTNNNNNNAA
    ANNTAAATGG ATNNTNNTGG NGNAATNNNA ANTTNNANAA NAANNANTNA
    ANTTTTNNGG GTTNAAANTN AAAAAAAATT TTAATNCCCA AAANTNTTTT
    TTTTNAAACN NNCTTTAAAA AGGTTTTTTA AANAGGGGGG TTTCCAAAAA
    TTCCAGGTTT TAGGGACCAN NGGGATTTTT NNATTTTTAA AAATCCCCNC
    CAAAAATTGN ATTTTTAAAA AAAATTNNTA TAATTTGGNA AGGANAAATT
    GGTTTGGAAA AACAAANGGG AAATGGNAAN GGGGGGGNNN TNAAANAANA
    AANAAANCCC N
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 226493 [Map]; Strand: w
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -301; Region: promoter
    Flanking Genome Sequence: 53-3495-1 - 3-prime edge
    AATTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    CCACATAGTC CAAAAGTAAT TCGTAAACCC AATCTAATCT TATTATTAAC
    TTATTAAATT TTGGTGTAAT AACTCGATAA AGTTTTCGCG CCATATTGAA
    ATCATGTTTA CTCATTTCCT TTTGATCTTG CAAATTATAC GCATAATAAT
    ACATGTTATT TCTATTGTCA AGCAAGTACA AGAGTGTAAG TGTATATCTC
    TCTCTATATA TACATATATG TCACATGTGC ATAAAGATTT TGGTTTATCT
    ATAAAACAGG ACAAAAGGCA AAGTATAGTA GACCCGAAAA ACAATCTCTT
    GGTAGCCTTT TCATCTCTCT TGCATCACAA GTAAACCTCT CATCATTCAT
    TTCCACACAG CACTGAAACT CGAGCATTTG CTCTCTCGAA TCCCATTTCC
    CTAGCTAAAA GGTTCGGAAT T

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR