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53-3508-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18606102 [Map]; Strand: c
      • AT3G50180.1 - [+] show detail - Plant protein of unknown function (DUF247)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3508-1 - 5-prime edge 
    ATAACGATCC AGTTTTCGCG GTTCGAGGAT CGATGCATTC GATTCAACGT 
    GACATGATAA TGCTGGAAAA TCAACTTCCT TTGTTCGTAC TCAACCGGTT 
    ATTAGAGTTA CAACCCGGTA CACAGAACCA AACTGGTTTA GTGGAATTAG 
    TGGTTCGGTT CTTTATTCCT CTAATGCCAA CGGCCGAGAC GTTGACCGAG 
    AACTCGCCTC CAAGAGGCGT ATCCAATGGA GAGTTGCACT GTCTTGATGT 
    TTTCCATCGA AGTCTGCTCT TCCCAAGATC ATCCGGAAAG GCAAATTACT 
    CACGCGTGGC TGACAAACAC CTACAACGAG TGATACCTAC CGTGACCGAA 
    CTAAGAGATG CCGGTTTTAA GTTCAAGCTA AATAAAACCG ATCGGTTTTG 
    GGATATTAAA TTCAGCAATG GTTACCTGGA GATACCCGGT CTACTTATCC 
    ATGATGGTAA ATCTCCCTTC A

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18606218 [Map]; Strand: c
      • AT3G50180.1 - [+] show detail - Plant protein of unknown function (DUF247)
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-3508-1 - 3-prime edge 
    ATCGTTATGA TCATATCTAC GTAACAGCCA AAAATGAATA ATCAAAATCA 
    GTAGTTTTAG ATAACCCGAT TTAAAATCAT ACCGGATTAG CAAGATAACT 
    TGACAAAAAC AAGAAATTGA ATCACCGCCT AACCCCGAGT TTCAAGAATC 
    CTTCATTGAC CTCCTTGGAG GAGCTCGAGA ATAAAACAGC CATCAAGAAG 
    AAGCATTTCT GTGAACTCGT TACTGCTCAA AACAATGGAA CCTTCGTAGC 
    AAGCACGAGC CTTCTCCTCC AGCTCTATCA TGGCGTCAAG AAACACTTCA 
    ATGCCTTGGT TCGTACGTTT TAATACCATA TTGACGGCAC GCCATTTATG 
    GCACTCCATG GACTGTGTTT GCTGTCTCCC ATGGTGATAT GGACCAAGTG 
    AGACAGTCTG AGGGAAATAC GACTTCTTGT

AT3G50180.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF247)
Computational Description
Plant protein of unknown function (DUF247); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50120.1); Has 18820 Blast hits to 10177 proteins in 649 species: Archae - 36; Bacteria - 1683; Metazoa - 7662; Fungi - 1574; Plants - 4386; Viruses - 842; Other Eukaryotes - 2637 (source: NCBI BLink).
Link
InterPro Scan - TAIR