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53-3509-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23926191 [Map]; Strand: c
      • AT5G59310.1 - [+] show detail - lipid transfer protein 4
        Distance: -339; Region: promoter
    Flanking Genome Sequence: 53-3509-1 - 5-prime edge
    TCATCTACAA CGAAGATACA AATTTTTAAA CGATTTTCTC TTGTCTACTA 
    CAGTATAACA TCGCTCTAAA CATGCTAATT AAAAAAACAA GTTTAATTAA
    CTGCAGATAA ATGAATATAT ATTTTTTAAC AGTATAGCCT GTATATATAT
    TGACGTATTG GTCTTTGTAC ATTCTGAAAA CTGATACTAT TGTTTACATA
    ATTACATATG ACTGGAGAAA CTAATTATTT TGGTTAGTAG AAGAAACATA
    ACTACATATG ACTGGAGAAA CTAATTATTT TCGTTAGTAG AAGAAACTAG
    AAAGAATGCA TGAAGTAAAT GCAAAACCAA CTACTAACAA ACCCTACTTA
    GTCATCATTT TTTCCCCATA CGAAATCCCT ATATAAACCC ATCATCATCT
    CCCACTTTTC TCACATCCAA CAACAAAAAC ACAAGCGTAG AAAACAAAAC
    TCAACTAATT GTGTTATCAC CCAAAAGAGA AGAGCAAACA CAATGGCTTT
    CGCTTTGAGG TTCTTCACAT GCTTTGTTTT GACGGTGTTC ATCGTTGCAT
    CAGTGGATGC AGCAATAACA TGTGGCACAG TGGCAAGTAG CTTGAGTCCA
    TGTCTAGGCT ACCTATCAAA GGNGGGGGGG GGNGCCNCCT CCGTGCTGNG
    CAGGAGTCAA AAAGGTGGAC CGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23926304 [Map]; Strand: c
      • AT5G59310.1 - [+] show detail - lipid transfer protein 4
        Distance: -452; Region: promoter
    Flanking Genome Sequence: 53-3509-1 - 3-prime edge
    GTACTAGATG AAATGTCAGC TATTATGTGT ACTATATATG TAATACCGTC 
    CAATTAAATG CGATGTGCAG CTGATAGACA CGTGTATCCA ACACTAAACA
    TCACAATTCT CCCATCACGT TTACTAATTA TGGCCATTAT AATTAGCAAA
    GTTCACATTT TATGACTTAC TACATAATTG AATGATAGAG GTGCTATATG
    GAGTTTTTCT CGATATTTCG TATAATCATT AACATAAATG CGTTTGTCAA
    CAACAAAAAA GATTTAATAA ATAATCTGAA TGATAACAAA ATTTATTATA
    ATCGTACGCC AAAAATACGT TTTATAGCCC TGCAGGAAGA TTTTTACGTG
    AATGCCACAT CAATTCAATG CATAATTTTG TATACGAACC ATAATAGGAC
    GAAAAAAACA GTCTTTTTCT AACTATACTT GAAACCAATT CTAGACTCAA
    GCGGGAATAA ATACACGAAA CCGAATTCGT CTTATGCAGT ACATAGCATG
    AATGCAGTAT AT

AT5G59310.1

Model type
Protein coding
Short Description
lipid transfer protein 4
Curator Summary
Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational Description
lipid transfer protein 4 (LTP4); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 3 (TAIR:AT5G59320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR