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53-3539-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 233549 [Map]; Strand: w
      • AT4G00530.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3539-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATACGC CACCATCGTC GTTCTTCTCA CCACTTTATC 
    GGTTTGAGGA TTCATTATTT CGTCTCAGCA AAAATGCAGC AGCCAAAGCA 
    AGCAAGCAAG AGAATAATAC AACATTCATC TCCTAGTAAG TGTATAAATG 
    TTGATAGTTT CGGTGCCGTT TTTAAGTTTT ACTCAGAGAC TGCAATACAT 
    GCTTTCTTCA GTTAAACGAC ACAGCGTACG ACTTAGTTAA GCATAAACGA 
    CACCACAATG CATAGTCCAC CGCTTCAGGC CGTTTGTAAC TATCCGAGTA 
    AAACCGCTTC GTGCCTGATA CTGATTTAAA GTATCCGGCC CATTTCTATC 
    AATTTTCCTC TTTAGTTTGG GCCCATCTAA AAGCACCTGA AAGGCTGAAA 
    CTGCTTGCCG TTTTTTAATA TTCAATACTG AGACTGATTT AAAGTATCCG 
    CTATCAATTT TCCTCTTTAG TTTAGGCCCA TCTAAAAGCA CCTGAAACTG 
    CTTGCCGTTT TAATCTTCAA TACTGAGACT GCATTACGTT TTTTTTTCTA 
    GCCCATTACG TGTCACGGNG TGCGTATCTT TTGATAATGT CTCAATCAAA 
    ACCTTTGGAT TATCTTTTGA ACGTAAACAC ACAACATCTT TTTAACATAA 
    ACGTTAACCG CAACAATTTT GNGATATCAA CACTGGTTGA TTTTACCAAA 
    AAAAAATTTT TTTTTTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 93697 [Map]; Strand: c
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: -550; Region: promoter
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: -226; Region: promoter
    Flanking Genome Sequence: 53-3539-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    CTAAGACACC ATACGAACTA ATTTTTATCA AAAACAAATT ATCAAGCTCT 
    ATTACAATTC CGCATGTGTG CTATACATTA GATTAATTAA AAGAAATTAA 
    ATCTGTTTTC ACTCCATTTA TCAAAAGTAA CATCTTTAAC GAATCAAACC 
    CATAAGGTAC TCTTACTCTC TATTAATAGA GGAGAATGTG TCATCTTCTC 
    ATTACTCAAT AAGCATACTT ATCATATACA CAATATCACA ATATGAGAAG 
    GTCAAAATGT TCTTGCCATC ATCATCTACT TGTTCTTGTT ATCGTTGTTC 
    TTTGGATATC ACCAGGATAT GCTTCAGCCG AAGATGAACA TGCAAAGGTA 
    ATGATAATAT ACAATTTTTG TCTCTCCAGC TTTGTTGTCA TCAGATTGAA 
    CAAAACTTTA TGTTGCAAGG AGAATATTTA CTCTTGAAAT TCTTAATTAT 
    AAAGGATTTC TATATCATAT ATTTGGGAGA TCGACCGGAT AATACAGATG 
    AAACTATCAA GACACACATA GATCTTCTAT CATCTTTGAA TATCAGGTAC 
    ATGTCATTCA TCAATACATG TATAAGACAT ACTCTAAAAC ATATAAATAC 
    CGTAACGTTT TATGGAGTAA TGTTCTACTT NGGTTGTTTG CTAACCAAAT 
    TTATAACGTC TCTTGATAAA ACAGCCAAGA AGAAGCAAAG GAAAGAAAAG 
    TATATAGTTA CACTAAAG

AT4G00225.1

Model type
Pseudogene
Computational Description
pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity and 2.0e-09 P-value to GP|28371870|gb|AAO38059.1||AY190281 sucrose transporter SUC1 {Brassica napus}
Link
InterPro Scan - TAIR

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00530.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01725.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR