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53-3543-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051989 [Map]; Strand: w
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 53-3543-1 - 5-prime edge 
    TGTCAAGAGG CAAGGAAGGA CTCTTTACGG ATTCGGTGGT TAATTAGAGT 
    TTTTCAGATC CGCGTTTGTG TTTTCTGGGT TTCTCACTTA AGCGTCTGCG 
    TTTTACTTTT GTATTGGGTT TGGCGTTTAG TAGTTTGCGG TAGCGTTCTT 
    GTTATGTGTA ATTACGCTAT TTCTTCTTGC TTCAGCAGTT TCGGTTGAAA 
    TATAAATCGA ATAAAGTTTC ACTTTATCAG CGTTGTTTTA AATTTTGGCA 
    CTAAATTGGT TAAAATTGCT TCAATATTGT ATCTAAATAG AAGAGACAAC 
    ATGAAATTGG ACTTTTGAGC TCAAATCTTC GAACATTTAT TTCCTGATTT 
    CACGATGGAT GAGGAAAACG AAAGGGCGGT TCCTATGTCC GGGAAAGTTC 
    CCGTAGAAGA CAATGAGCAA AGTTACTGAA ACGAGGACAC GACGTCGCAT 
    TGGTACGGAT ATGAGTTAAA CCGACTCAAT TCCTTTATTA AGACATAAAC 
    CGATTTTGGT TAAGGTGTAA CAGTGAGCAA CCGATACAAG TTTGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24047052 [Map]; Strand: w
      • AT5G59680.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3543-1 - 3-prime edge 
    GCAGTTTTTC CACTCTGGAT GAATGTTGCG TCTGAATAGT ACTCTATTTC 
    AGTATTTGAT TCTTTATAAG GAGACAGTTC ATTGGCGGGG AGCCCGCAAT 
    CCAAACTGAT GAATCCTGTA GAACAGAAAT GGATAAAAAT TAACACTACN 
    GATCAAGAAC AAAAATGGTA GTAAGATGGA GAAGAAGAAG CATACACAAA 
    TATGTATATA TCTAAATTAA AATGTGAATA CCTTGTTGGC TCTGAGCTTG 
    AACAATATGA ATGATTGCCA AAGTTCCGAT TAACGGCAAC AAAAGGGAAA 
    GAGACCTCTC CATATTCTTC TCTTACCCAC CAAGGACAAA TCAAGAATAA 
    NTACCC

AT5G59680.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59690.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: thylakoid; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR