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53-3547-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17999411 [Map]; Strand: w
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 4677; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 1901; Region: intergenic
    Flanking Genome Sequence: 53-3547-1 - 5-prime edge 
    CCCAAGAGAC AGAAATATAT GTAACATATA CTATAACTAT TTAAAATATT 
    TTACTCATTG ACGAAAGAAA AAGTGAAAAA AAAAAANGCC ANGNCAANAA 
    ATTTTNTTTN GTTTNTAAAG GGNCCAAANG TAAAAGGGNN ANAANGGGAN 
    AGNCTTTCCT TTNAANGNCN GAAAANGGCA AAGGGGNCNN NCTNTTNNAA 
    GTTNGACCAN CTCCCCANTT CCCCNTTNGA ANATNGCCCA NTTTNTTTAA 
    CCACCNGTAN TTAATNNGAG GGGTTNCTCT NNGTCCNANN TTTTTTTTTT 
    NNAACCGNCC TTGGNAAAAA AAGGGGGNNC CCNGNTTNNC TNGNAGGTTT 
    TNAAAANTAA ANNNACCGNG NAAGGTCCCN NANGTTTTNN TTTTTNNTGG 
    NNNTTGGGGG GNANNNNNTT TTTTNTNNAA NCGGCTTNNA GTTNTTNCGN 
    NNAAATNNNN NGTTTTNGNN GTTCCANTAA AANTAACNTT TNNNCANTTG 
    NCCNTTTTTT CCNTNGAAAA AANTTNCCCC AAANTTNAAA NGGNCNATTT 
    AANTTGGGGG TTAANNAAAN CAAAAANNAN CCCNNNTTNA TTTGGGGGTT 
    TCCGGGTTTT NGTTNNANCA AAATNCCNGT TCCCCNTTTA ACCNCNTTTN 
    GNNCCNNCCC CCGGANCTNG TNACCNTTTT TTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17999288 [Map]; Strand: w
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 4554; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 2024; Region: intergenic
    Flanking Genome Sequence: 53-3547-1 - 3-prime edge 
    GCCATCTGTA TAGTACTGAA TATACTATTA TTGCCCTCAA AATTATACAC 
    GAACATCAAT GAAATTGTAA TTCCAAAAGA GTTTTTTTTT TNGGGGNCAN 
    CTTTGGNAAN NTTGGNTTNG AAATTTNAGG GANCCNAAAC TTTTTT

AT3G48550.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR