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53-3564-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14122666 [Map]; Strand: c
      • AT5G35970.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3564-1 - 5-prime edge 
    ANGGCGGANA GATTTATGGA GGAACGTATT AGAACTGGAT TAGACNAGCA 
    GATAGAAAGC GANGGCTTNG GATTCTTGCA ACTGCAGGAN GTNCANGGGG 
    AGNANTTCGG GANTTNANGC AGAACNGTCG GATCTGGTTT GACGTTTGTG 
    ATTCAAGCTC AACCGTATCT CAATGCTATT CCCATGCCAT TAGGTTCTGA 
    AGTCATTTGT TTGAAGGCTT GTACTCATTA TCCTACCTTG TTCGATCATT 
    TCCAGAGAGA GTTGCGTGAT GTTCTTCAAG ACCTGGAGCG GAAGAATATA 
    ATGGAGAGTT GGAAGGAGTC TGAGTCTTGG AAGCTGCTCA AGGAGATTGC 
    AAATTCAGGT TTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14122782 [Map]; Strand: c
      • AT5G35970.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3564-1 - 3-prime edge 
    TCCGCCCTAA TGGATCACCA TTTTGATTCA AAGCTCGAAG ACTCAATTCT 
    TTATCGTTCT TCGGTTCCTC AACAACACTT AAACTCTCAG ATTCAGTATT 
    ATCGTTCCTC TTCTCAATTT TCTTAAACCT AAGTTTATCG GAAACGTTAC 
    TTTTCCTTCG TGGCTTCTTC TTAGTAACAC TGGAGCCGCC ATTAACGCCG 
    CTGCAAAAGA CCTTCCGCGT CGGGAAAACA CGAACTCCGA CAACACAAAC 
    GTAGTTTAAC GGCGGTCGAG TGAACGTGAA CGCCGCCGTC GCCGTAGTAG 
    TCGACGGAAT CCGAATACTT CTACACAAAA AACTTGAAGC TGCTTCCATC 
    AGATTTTTCC CAGCGATTCA ACACAAAAGG AAACTTCAGA TTCCCGAGAA 
    AACGCAAGCT AGAAAGTGGA ATCTAGTGAC ATTTTCTGGG AATCAAAAGG 
    AAAATATACA GAGAAATTGA AAGTCTCGTG TAACTTATTT ATATATTGGA 
    GAAAGGTTTT

AT5G35970.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6377 Blast hits to 5712 proteins in 1082 species: Archae - 188; Bacteria - 2376; Metazoa - 1211; Fungi - 1055; Plants - 600; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink).
Link
InterPro Scan - TAIR