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53-3567-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16175520 [Map]; Strand: c
      • AT3G44605.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-3567-1 - 5-prime edge 
    GGGGNAGGNN GNGGGGGGGG NGGNGGGNGG GGNANNGGGG NGGNNAATTA 
    ANAAAGNGTT NGNANCCGCN GTCANGATCT GGGGTNACTN AGAANNGTCC 
    NCCNNGNGGC TNACCCACTT CTCACCGAAC CACTCTTTGG CAGCNTTTCC 
    TTTGGATCCA TNTCACACAA ACTCTGTGAA TCCTGGCCCC NATCTNGTTC 
    CTNACAACTT TCCACACCAA TCNTACCATN NATACTANCC TCACTTACTT 
    TCGTAGCANC ACCTTGAAAA ACCTGCTTNG CTAACAAAGA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 110819 [Map]; Strand: w
      • AT4G00240.1 - [+] show detail - phospholipase D beta 2
        Distance: -101; Region: promoter
    Flanking Genome Sequence: 53-3567-1 - 3-prime edge 
    TACTTATATA TATCTCTCTT CTGATCAATT CTCAAACCGC ATTGTTGCTT 
    TTTTGAAATT TCGCTTCTGA TGAAGAAATG TTGATCGGAG AAAACGTTGA 
    AGACGTTTGA ATTTCTTTAT GAATTAGCCA GTTGTGGTGT TAGTTAGTTA 
    CGATGGAGAA TTATGGTTGG AATTACCCTT ATTACCCTTA CAGGCCTCCC 
    CGGCCTAATC CTCCTTACCC AGCACCGCCT CATCACCATG GATCAATGTC 
    TCATTCGGGT CCATTAGACC ACGACCACCC TCCAATGAGT TACTATGCTT 
    CTTTTGATTA CCAACACCAA CCTCCTCCTC CTTACCCTCC AGTGAGTTAC 
    TATGCTTCGT TTTCAAGTCA TTCAGATTTA TCATACTCAG GCAGGCTAGA 
    TTCGTCTGGT CATGGTTTTA CATATACCGC ATCGCCGCAT AGTCCCGGTA 
    TGCACATTGT GCCCTTTGGT AAAGCCTCCT TGAAGGTCCT CTTGTTGCAT 
    GGT

AT3G44605.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.1e-38 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR

AT4G00240.1

Model type
Protein coding
Short Description
phospholipase D beta 2
Curator Summary
member of C2-PLD subfamily
Computational Description
phospholipase D beta 2 (PLDBETA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: phospholipase D beta 1 (TAIR:AT2G42010.1); Has 2407 Blast hits to 1935 proteins in 427 species: Archae - 0; Bacteria - 522; Metazoa - 526; Fungi - 534; Plants - 642; Viruses - 3; Other Eukaryotes - 180 (source: NCBI BLink).
Link
InterPro Scan - TAIR