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53-3571-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24204211 [Map]; Strand: c
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 1274; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -3478; Region: intergenic
    Flanking Genome Sequence: 53-3571-1 - 5-prime edge 
    TAAACAACAG TTATTATAGT TAGCAACGAA GCTTAAATGA GTCCAAGATG 
    TTTGCAATGT TGTTTCCCTG AGACCTACAC CAAGAGATGG AGAAAAATGC 
    TTGAGCTTCT GCATCAAACC CCAAAAAAAA TCAATCCTAG TCCTAGATAT 
    CTCCTTCGAG AACCTCAGTG CCTTGCCTAC CACGATATTC CCAAACTCAA 
    TCTTTGCCAG CCTCATCAAC CTATCTTCAT CTCCCTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24204327 [Map]; Strand: c
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 1390; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -3362; Region: intergenic
    Flanking Genome Sequence: 53-3571-1 - 3-prime edge 
    GTTGTTTATG TCTTAAACTA GTTACAATAC TTAAATTGGT CGGGGGTAGT 
    CACATATATA ATAATATAAC TCTTGTAAGA GATGTTTTCG TCTTTAACTG 
    CTTTTCTAAA GAAAGTTGAA GTTTTTATGA AGAAGAGTTA CAATGTGAAA 
    AAAATGAAAT TGGCTTAATC ATTTCTTCTT GTGTTCTCTT TTCCGAAGAC 
    AAAACAAACC AAAATCAAGA GCNTGTAAAT AAAAACACAT TATTACTTTG 
    TTTTCAATTG GTATTACGTT TAAAATATTA GATAAAGATA CTTGACAATT 
    CCTATGTCTT TGTTGAAATC GGTATAATTT AACAATCGCA CGAAAGAATG 
    GCCAACTTGA ACTTGCCGTG TCACATCGTA CCAGAAACAA TATTCATTTG 
    CTGAATAATA TAAATCGTAA AATCATATGG TCATGGACTT TATGGACAAC 
    TATGATAATT TAAATATTAT CCTTGATTTT AAAATAAATA TTTTATGGTT 
    TTATTCCATA ATGGAATCAT AGCATTATAG CAACATCAAT TCTAGTGAAT 
    CTGTACATAG CGGAAACAAA TGTTACTAAT TTTTAGATAG ACAATCATGA 
    ACAAGCCTTC AATCGAAATG CATAGATTGG TGAAAATGAA TTTGGTTGCG 
    TTCTCAGCAA AATGAATAAT ATATGATCTA TCTCATGTCT TGCCACGGTA 
    AATTTAGCCC AATTGGTAT

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60120.2

Model type
Protein coding
Short Description
target of early activation tagged (EAT) 2
Computational Description
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.2).
Link
InterPro Scan - TAIR