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53-3572-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2748704 [Map]; Strand: c
      • AT3G09000.1 - [+] show detail - proline-rich family protein
        Distance: 245; Region: intergenic
      • AT3G09010.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -1249; Region: intergenic
    Flanking Genome Sequence: 53-3572-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATANAAG ATNCAAATAT ATNTGNTGGA 
    GATNCTTATC GTACAACTTC TTTTTTTTGC ATCGGNCNTN TNGNAATGAN 
    CCNTTTNGGT CCATNCCANA GNCTGTAAAT TTTCAAGTAA TTNAGNGGAT 
    TNNCAAANAG GGTTGNCCCG CNANATTTAG GTCCCAAACT CGTNAAATTC 
    TTCTTCTATG CTCTGTTTNG NCTTCTTTAC TATTNCCATG TTTNGTTCTG 
    TTTCTCNATT CTNACTTNGT TCTATATCTN GGTTNAAAAT ATCAAACNCA 
    GCNTTTANCA NTNGCTTNGG GANAACNTTT NTNAAGGAAA AAANACNTTN 
    GANGCCTGAG GTTTATANAT TATNCGGTNG ATCACTTAAA ANCAAGTNGC 
    TTCNAANCGN GANACCAAAA ANCANGACCC CAGATTNCNT ANTANTNTGG 
    GTCAANATGT NAACTNGGGG TNCNGGTTCC GCGGAAAANC ANCNTANCTT 
    NTTTCACTAA AAAAATNATN ATTTTCGGNT TCGTTTCCGT NTAANCNCAA 
    AANGTTGATG TTGNCAACAC TCGGGTCAAA TNANCTCACA GNGCTGCTCG 
    TGGCCACCGG AAAGCTTGAN ACANTACCCG GCCGACTTCT CACACTGTAC 
    ATTGATGATG CCGGAACTTT TGTCACAAGC GGCCGGAGGT TTCCAGTCAT 
    GCCTCGTCTT ATNTCCTACC CACCAAANAT CGACAATTGN GTTNTTATTA 
    CCANANAACT TTAANAAACA CTCTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18429369 [Map]; Strand: w
      • AT2G44690.1 - [+] show detail - Arabidopsis RAC-like 9
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3572-1 - 3-prime edge 
    GATTTATATA CAGTGGGGAA CGTGTTGCTG GTGTAGGAAA TAAGAAGACA 
    AGTTTTGCCC ACAGCTCCAT CGCCAACAGT GACACACTTT ATAAACGTTG 
    TAGCTGTTGC TGATGATGTT GATGTTGCAG CCATTGAAGC TGACATTGAT 
    TGAGAAAATT CTCTGATTTT ACTTACCCTG TTCTCTCTCT TTCTGTGGTT 
    TTATTCTGGC TCAAGTGAAG AATG

AT2G44690.1

Model type
Protein coding
Short Description
Arabidopsis RAC-like 9
Curator Summary
A member of ROP GTPase gene family.
Computational Description
Arabidopsis RAC-like 9 (ARAC9); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like 3 (TAIR:AT4G35020.3); Has 24763 Blast hits to 24736 proteins in 683 species: Archae - 8; Bacteria - 73; Metazoa - 12794; Fungi - 3855; Plants - 2697; Viruses - 20; Other Eukaryotes - 5316 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09000.1

Model type
Protein coding
Short Description
proline-rich family protein
Computational Description
proline-rich family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 72642 Blast hits to 41597 proteins in 1862 species: Archae - 219; Bacteria - 10073; Metazoa - 26321; Fungi - 16532; Plants - 3439; Viruses - 1862; Other Eukaryotes - 14196 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09010.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G16670.1); Has 118495 Blast hits to 117144 proteins in 4669 species: Archae - 109; Bacteria - 13491; Metazoa - 44039; Fungi - 9996; Plants - 33355; Viruses - 385; Other Eukaryotes - 17120 (source: NCBI BLink).
Link
InterPro Scan - TAIR