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53-3574-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 222318 [Map]; Strand: w
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: -2; Region: promoter
    Flanking Genome Sequence: 53-3574-1 - 5-prime edge 
    ACCNTTTTGT ACTCAACGGA TCTGAGTGAA TCCTGAAAAC TTTTTTAGGA 
    TTTCAAAATT GATTTGAACC AACCAATGAT TCTTGGATCC CATGAATAAG 
    CCTTCACGTG GCCTTTTGAT TTCACATTCC ACAGAAAATC CAAATTTAAC 
    TGAATTTGAG ATAATTTTGG TTTAGTGATG GCCGATTAGG TTGAATCATA 
    GTGTAATTCC AGTGAGCGTG AAGCTTGGAG CTCCGACGAG AGTATCGGCT 
    CGGAGCTCGT TACCGTTCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 222202 [Map]; Strand: w
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: -118; Region: promoter
    Flanking Genome Sequence: 53-3574-1 - 3-prime edge 
    AAAAGGGTTT TGTCTTTTAC CACTTTTTTC TAATCCACGT GGCGTGACCT 
    GACACGTCAG ATAAGTACGC GCGTTGCAAC TTTATCAAGG GGCTTTTGTG 
    AATATTACTA TGGGCTTTTC AGAATATATT ATTGGGCCTG TAAAGTCACC 
    GTCACTTAAA AA

AT4G00490.1

Model type
Protein coding
Short Description
beta-amylase 2
Curator Summary
Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description
beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR