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53-3578-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134687 [Map]; Strand: w
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3578-1 - 5-prime edge 
    GTAACAGGTG CCATCTACAA CGGCTACTTT TGCAATGATC CTATTGTTTG 
    GATGCATAAG GAGTGCGTTG AGCTCCCATC TGAGATCAAC CATCTTTTCC 
    ACCCCCAACA TCCTCTCTTG CTCACATATG AAGAGGGATG GTGGGAGTTG 
    TTTCTGTGCT TTGTGTGGAG AAACAAAGCC AGCGAAGTAC TTTTATAGTT 
    GTTCCACATG TAAAATCAAG GTGGATTTGA CTTGTGGGAT GAACCCACCA 
    CCGCCAGCTA TTGAACATCC CATCTGCCAT GACCATCCAC TTGTCTTCCT 
    GAAGAAAAGA CAGGAGAAAA CCCCTTGTGA AGTTTGCAAG AATAGAATTA 
    TTGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134571 [Map]; Strand: w
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3578-1 - 3-prime edge 
    CCTGTTACAG AGCAGATATG ACATCTAGCG TTGATGTACC GAGGAGCAGG 
    TTGAAGAGAA TAATCGCGAA AGGGTAGTTG TACTGCTGAT GTATCCATGT 
    ATTGATCGAT GGAAGTGATC TTGCGTGTTT CTTTGGTGAG ATCACNGAAG 
    TCGAACCGGA AGACAGCAAT ATATTTATCT TCTTGTATAT AAATAAATAA 
    AAATATGAAA AATGTATGTT ATATATGTTG CCTTCGCAAA CCAAAAACAA 
    ATTGGGGTGT TTATCTAATC CTATATAGTA TACCGGAACA TATTGTCCGT 
    TCCGTGCCAT ACAAGGTCCT CCTCTGTGTC TCACATGTGA AGTTAGGAGG 
    CTTTTTTCGC TAACAGCTAA CATGCTTGAA GCTTGAATCA TTTTTTTAAA 
    GAAAATATCG TCGTGGATCT CAACTAGTTA ATACCGGTTT TGTTTAATAA 
    CTCAAGTGGC GTT

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR