1. Home
  2. Mutant Lines
  3. 53-3593-1

53-3593-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108652 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -41; Region: promoter
    Flanking Genome Sequence: 53-3593-1 - 5-prime edge 
    GATGAGATGA GGTTAAAAAG AAATGTGGAT CTCGAAACTT AGGAGTAAAA 
    CAGAGGAATT GATCTAACGA AGACTATAGA TAAATAGTCC GATGAGGAGG 
    AGGTAGAAGA CGCGTTGTTA AACTTTGCGA GTTTTGTTTT GTTTCCCAAC 
    TTGACGGTTT GATAGAAGAA TAAGAAGAAA ACAGAGAGAG ACATGATTAG 
    AAACTCCTCT TCCTCTTGAA TTTTGACTTT TGACTTTTCA GTTATCGCCG 
    GTCTGATATG GCCTTCGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108536 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3593-1 - 3-prime edge 
    ATCTCATCTC TTAGTCGAGA TCTTCACTTT CTGATGACAA TAGGGTCGTT 
    TTTCTCTTCT CTCTTATTCT GGCGCAATTC TCAGGTAACC TCAATCGACT 
    ATTCTCTGTT CTACTCCTTT TTTCTTTATC ATTTTAAAAA TCCTAACATT 
    GAAAATAAAG TAGTTAAATA GAGTCAACGA AAACATTGTT AATGAAACAG 
    TGGTGTGCTT AGCATAACGA ATCAGACAGA CAAAAAGTGT CTGGATC

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR